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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003559 through 18771 annotations produced 3 hits



lethal3Des (su(f)):

Annotation Number : CG17170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003559
Gbrowse : chrXHet:69194-77981 (+) // 100.0 //
Probeset : 1627396_a_at
Accessions : protein= NP_001015240; /// NP_001104479;, nucleotide= NM_001015240; /// NM_001111009;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003559.
BioGrid reports that CG17170 interacts with CG7697 CG5424 CG5424 CG5424 CG1689 .
VDRC has 2 RNAi stocks for FBgn0003559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 14 of 4 2.50Up
Head48 34 of 4 1.40Up
Eye57 24 of 4 1.64Up
Thoracicoabdominal ganglion76 84 of 4 2.20Up
Salivary gland44 54 of 4 1.26None
Crop60 54 of 4 1.70Up
Midgut35 24 of 4 1.00None
Tubule47 14 of 4 1.30Up
Hindgut43 24 of 4 1.20Up
Heart31 44 of 4 0.89None
Fat body32 54 of 4 0.92None
Ovary30 24 of 4 0.90None
Testis11 14 of 4 0.30Down
Male accessory glands68 14 of 4 2.00Up
Virgin spermatheca33 24 of 4 0.94None
Mated spermatheca36 44 of 4 1.03None
Adult carcass29 23 of 4 0.80None
Larval CNS83 104 of 4 2.37Up
Larval Salivary gland37 34 of 4 1.08None
Larval midgut22 32 of 4 0.64Down
Larval tubule54 24 of 4 1.60Up
Larval hindgut33 34 of 4 0.95None
Larval fat body37 34 of 4 1.10None
Larval trachea45 44 of 4 1.28Up
Larval carcass25 24 of 4 0.71Down
S2 cells (growing)66 34 of 4 1.89Up
Whole fly35 14 of 4



lethal3Des (su(f)):

Annotation Number : CG17170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003559
Gbrowse : chrXHet:69194-77981 (+) // 100.0 //
Probeset : 1622934_at
Accessions : protein= NP_001015240; /// NP_001104479;, nucleotide= NM_001015240; /// NM_001111009;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003559.
BioGrid reports that CG17170 interacts with CG7697 CG5424 CG5424 CG5424 CG1689 .
VDRC has 2 RNAi stocks for FBgn0003559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 10 of 4 2.00Up
Head8 20 of 4 1.10None
Eye8 20 of 4 1.01None
Thoracicoabdominal ganglion9 30 of 4 1.10None
Salivary gland21 80 of 4 2.61None
Crop20 20 of 4 2.40Up
Midgut18 20 of 4 2.30Up
Tubule10 00 of 4 1.30Up
Hindgut15 30 of 4 1.90None
Heart9 31 of 4 1.17None
Fat body12 80 of 4 1.49None
Ovary10 01 of 4 1.30None
Testis3 00 of 4 0.40None
Male accessory glands14 31 of 4 1.70None
Virgin spermatheca4 10 of 4 0.50None
Mated spermatheca3 00 of 4 0.45None
Adult carcass9 60 of 4 1.20None
Larval CNS27 104 of 4 3.31Up
Larval Salivary gland6 10 of 4 0.75None
Larval midgut4 00 of 4 0.50None
Larval tubule16 20 of 4 2.00None
Larval hindgut11 20 of 4 1.34None
Larval fat body14 42 of 4 1.80None
Larval trachea15 20 of 4 1.89None
Larval carcass8 20 of 4 1.05None
S2 cells (growing)29 53 of 4 3.55Up
Whole fly8 20 of 4



lethal3Des (su(f)):

Annotation Number : CG17170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003559
Gbrowse : chrXHet:69227-79945 (+) // 100.0 //
Probeset : 1628686_a_at
Accessions : protein= NP_001015240; /// NP_001104479;, nucleotide= NM_001015240; /// NM_001111009;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003559.
BioGrid reports that CG17170 interacts with CG7697 CG5424 CG5424 CG5424 CG1689 .
VDRC has 2 RNAi stocks for FBgn0003559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 44 of 4 1.70Up
Head66 24 of 4 1.10None
Eye59 24 of 4 0.98None
Thoracicoabdominal ganglion95 44 of 4 1.60Up
Salivary gland111 34 of 4 1.86Up
Crop96 24 of 4 1.60Up
Midgut71 64 of 4 1.20None
Tubule111 44 of 4 1.90Up
Hindgut88 24 of 4 1.50Up
Heart66 44 of 4 1.11None
Fat body82 74 of 4 1.38Up
Ovary88 54 of 4 1.50Up
Testis30 14 of 4 0.50Down
Male accessory glands144 34 of 4 2.40Up
Virgin spermatheca57 34 of 4 0.96None
Mated spermatheca58 24 of 4 0.97None
Adult carcass72 82 of 4 1.20None
Larval CNS204 164 of 4 3.40Up
Larval Salivary gland163 64 of 4 2.73Up
Larval midgut73 64 of 4 1.22None
Larval tubule120 14 of 4 2.00Up
Larval hindgut130 64 of 4 2.17Up
Larval fat body87 54 of 4 1.50Up
Larval trachea133 104 of 4 2.22Up
Larval carcass99 54 of 4 1.66Up
S2 cells (growing)232 154 of 4 3.87Up
Whole fly60 54 of 4

Looking for FBgn0003559. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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