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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003567 through 18771 annotations produced 1 hits



suppressor of hairy-wing (su(Hw)):

Annotation Number : CG8573
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003567
Gbrowse : chr3R:10130176-10134309 (-) // 100.0 //
Probeset : 1631004_s_at
Accessions : protein= NP_524349; /// NP_731897;, nucleotide= NM_079625; /// NM_169574;
Pathway : DNA-dependent // inferred from mutant phenotype"
Interpro : 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /
FlyMine data for FBgn0003567.
Homophila reports that CG8573 is a close match (3e-12) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG8573 interacts with CG10325 CG10325 CG6500 CG6474 CG5424 CG32491 CG32491 CG18572 CG10159 CG10388 CG10388 CG11387 CG11387 CG11387 CG11387 CG11387 CG11387 CG18412 CG3827 CG3827 CG3827 CG3827 CG3827 CG3827 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG3757 CG7803 CG32491 .
TRiP has 3 RNAi stocks for FBgn0003567 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 34 of 4 0.50Down
Head60 24 of 4 0.40Down
Eye50 24 of 4 0.34Down
Thoracicoabdominal ganglion55 24 of 4 0.40Down
Salivary gland85 134 of 4 0.58Down
Crop92 34 of 4 0.60Down
Midgut64 34 of 4 0.40Down
Tubule99 64 of 4 0.70Down
Hindgut64 24 of 4 0.40Down
Heart61 44 of 4 0.42Down
Fat body86 44 of 4 0.59Down
Ovary398 84 of 4 2.70Up
Testis89 24 of 4 0.60Down
Male accessory glands89 64 of 4 0.60Down
Virgin spermatheca101 64 of 4 0.68Down
Mated spermatheca147 74 of 4 1.00None
Adult carcass59 44 of 4 0.40Down
Larval CNS214 214 of 4 1.45Up
Larval Salivary gland303 84 of 4 2.05Up
Larval midgut64 24 of 4 0.43Down
Larval tubule119 34 of 4 0.80None
Larval hindgut113 24 of 4 0.77Down
Larval fat body69 54 of 4 0.50Down
Larval trachea140 64 of 4 0.95None
Larval carcass118 24 of 4 0.80None
S2 cells (growing)103 44 of 4 0.70Down
Whole fly148 104 of 4

Looking for FBgn0003567. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime