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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003575 through 18771 annotations produced 1 hits



suppressor of sable (su(s)):

Annotation Number : CG6222
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003575
Gbrowse : chrX:529919-537793 (+) // 100.0 //
Probeset : 1626259_at
Accessions : protein= NP_476754;, nucleotide= NM_057406;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0003575.
BioGrid reports that CG6222 interacts with CG6779 CG16784 CG10388 CG2155 CG2155 CG4385 .
TRiP has 1 RNAi stocks for FBgn0003575 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 64 of 4 1.70Up
Head93 34 of 4 1.00None
Eye106 74 of 4 1.15None
Thoracicoabdominal ganglion115 84 of 4 1.30None
Salivary gland121 54 of 4 1.31Up
Crop118 44 of 4 1.30Up
Midgut88 14 of 4 1.00None
Tubule122 94 of 4 1.30Up
Hindgut96 54 of 4 1.00None
Heart105 74 of 4 1.14None
Fat body115 34 of 4 1.24Up
Ovary229 54 of 4 2.50Up
Testis31 24 of 4 0.30Down
Male accessory glands283 124 of 4 3.10Up
Virgin spermatheca113 94 of 4 1.23None
Mated spermatheca111 24 of 4 1.20None
Adult carcass93 24 of 4 1.00None
Larval CNS212 204 of 4 2.30Up
Larval Salivary gland157 84 of 4 1.70Up
Larval midgut89 14 of 4 0.97None
Larval tubule121 34 of 4 1.30Up
Larval hindgut118 34 of 4 1.28Up
Larval fat body100 44 of 4 1.10None
Larval trachea173 184 of 4 1.88Up
Larval carcass131 24 of 4 1.43Up
S2 cells (growing)160 34 of 4 1.74Up
Whole fly92 64 of 4

Looking for FBgn0003575. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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