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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003598 through 18771 annotations produced 1 hits



Suppressor of variegation 3-7 (Su(var)3-7):

Annotation Number : CG8599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003598
Gbrowse : chr3R:9090076-9095763 (+) // 100.0 //
Probeset : 1626862_at
Accessions : protein= NP_001163601; /// NP_524342;, nucleotide= NM_001170130; /// NM_079618;
Pathway : by inactivation of X chromosome // inferred from direct assay 0000775 // chromosome
Interpro : centromeric region // traceable author statement /// 0000792 // heterochromatin // traceable author statement /// 00056
FlyMine data for FBgn0003598.
BDGP gene expression has embryonic in situ data for Su(var)3-7: 12 pix of staining in 12 body parts.
BioGrid reports that CG8599 interacts with CG9212 CG6476 .
TRiP has 1 RNAi stocks for FBgn0003598 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 24 of 4 2.80Up
Head13 14 of 4 1.00None
Eye18 14 of 4 1.34Up
Thoracicoabdominal ganglion36 14 of 4 2.70Up
Salivary gland8 30 of 4 0.60None
Crop13 24 of 4 1.00None
Midgut7 00 of 4 0.50Down
Tubule10 02 of 4 0.80Down
Hindgut12 14 of 4 0.90None
Heart15 14 of 4 1.12None
Fat body14 24 of 4 1.07None
Ovary30 14 of 4 2.20Up
Testis2 11 of 4 0.20Down
Male accessory glands15 53 of 4 1.20None
Virgin spermatheca26 14 of 4 1.99Up
Mated spermatheca23 14 of 4 1.71Up
Adult carcass16 14 of 4 1.20None
Larval CNS58 44 of 4 4.37Up
Larval Salivary gland11 10 of 4 0.83None
Larval midgut5 10 of 4 0.42Down
Larval tubule7 22 of 4 0.60None
Larval hindgut10 24 of 4 0.81None
Larval fat body21 34 of 4 1.60None
Larval trachea24 14 of 4 1.85Up
Larval carcass13 13 of 4 0.98None
S2 cells (growing)21 04 of 4 1.59Up
Whole fly13 14 of 4

Looking for FBgn0003598. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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