FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003598 through 18771 annotations produced 1 hits

Suppressor of variegation 3-7 (Su(var)3-7):

Annotation Number : CG8599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003598
Gbrowse : chr3R:9090076-9095763 (+) // 100.0 //
Probeset : 1626862_at
Accessions : protein= NP_001163601; /// NP_524342;, nucleotide= NM_001170130; /// NM_079618;
Pathway : by inactivation of X chromosome // inferred from direct assay 0000775 // chromosome
Interpro : centromeric region // traceable author statement /// 0000792 // heterochromatin // traceable author statement /// 00056
FlyMine data for FBgn0003598.
BDGP gene expression has embryonic in situ data for Su(var)3-7: 12 pix of staining in 12 body parts.
BioGrid reports that CG8599 interacts with CG9212 CG6476 .
TRiP has 1 RNAi stocks for FBgn0003598 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003598 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	37 ± 2	4 of 4	2.80	Up
Head	13 ± 1	4 of 4	1.00	None
Eye	18 ± 1	4 of 4	1.34	Up
Thoracicoabdominal ganglion	36 ± 1	4 of 4	2.70	Up
Salivary gland	8 ± 3	0 of 4	0.60	None
Crop	13 ± 2	4 of 4	1.00	None
Midgut	7 ± 0	0 of 4	0.50	Down
Tubule	10 ± 0	2 of 4	0.80	Down
Hindgut	12 ± 1	4 of 4	0.90	None
Heart	15 ± 1	4 of 4	1.12	None
Fat body	14 ± 2	4 of 4	1.07	None
Ovary	30 ± 1	4 of 4	2.20	Up
Testis	2 ± 1	1 of 4	0.20	Down
Male accessory glands	15 ± 5	3 of 4	1.20	None
Virgin spermatheca	26 ± 1	4 of 4	1.99	Up
Mated spermatheca	23 ± 1	4 of 4	1.71	Up
Adult carcass	16 ± 1	4 of 4	1.20	None
Larval CNS	58 ± 4	4 of 4	4.37	Up
Larval Salivary gland	11 ± 1	0 of 4	0.83	None
Larval midgut	5 ± 1	0 of 4	0.42	Down
Larval tubule	7 ± 2	2 of 4	0.60	None
Larval hindgut	10 ± 2	4 of 4	0.81	None
Larval fat body	21 ± 3	4 of 4	1.60	None
Larval trachea	24 ± 1	4 of 4	1.85	Up
Larval carcass	13 ± 1	3 of 4	0.98	None
S2 cells (growing)	21 ± 0	4 of 4	1.59	Up
Whole fly	13 ± 1	4 of 4

Looking for FBgn0003598. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720