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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003651 through 18771 annotations produced 3 hits



seven-up (svp):

Annotation Number : CT40960
Flybase ID : FBgn0003651
Gbrowse : chr3R:8126904-8127572 (+) // 100.0 //
Probeset : 1626594_s_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 04 of 4 1.80Up
Head22 44 of 4 1.80None
Eye12 13 of 4 0.98None
Thoracicoabdominal ganglion23 24 of 4 1.90Up
Salivary gland13 31 of 4 1.06None
Crop31 24 of 4 2.50Up
Midgut3 10 of 4 0.30Down
Tubule4 00 of 4 0.40Down
Hindgut20 14 of 4 1.70Up
Heart19 04 of 4 1.60Up
Fat body78 214 of 4 6.35Up
Ovary3 00 of 4 0.30Down
Testis12 14 of 4 1.00None
Male accessory glands7 10 of 4 0.60Down
Virgin spermatheca15 14 of 4 1.27None
Mated spermatheca19 04 of 4 1.60Up
Adult carcass57 74 of 4 4.60Up
Larval CNS14 14 of 4 1.15None
Larval Salivary gland7 30 of 4 0.56None
Larval midgut7 10 of 4 0.56None
Larval tubule10 21 of 4 0.80None
Larval hindgut6 11 of 4 0.51Down
Larval fat body74 54 of 4 6.00Up
Larval trachea5 11 of 4 0.46Down
Larval carcass5 11 of 4 0.45Down
S2 cells (growing)1 00 of 4 0.15Down
Whole fly12 13 of 4



seven-up (svp):

Annotation Number : CG11502
Flybase ID : FBgn0003651
Gbrowse : chr3R:8084470-8128509 (+) // 100.0 //
Probeset : 1628779_a_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
Homophila reports that CG11502 is a close match (9e-11) to human gene AHC;AHX;DAX1;NROB1 (NP_000466), a gene associated with Adrenal hypoplasia, congenital, with hypogonadotropic hypogonadism, 300200 (3);Dosage-sensitive sex reversal, 300018 (3).
BioGrid reports that CG11502 interacts with CG3166 CG3954 CG3954 CG3954 CG3954 CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG18085 CG15793 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6721 CG5163 CG6033 CG6033 CG6033 CG6033 CG33197 CG33197 CG10108 CG2368 CG9412 CG4380 Dmel CG33956 CG30149 .
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 84 of 4 1.50Up
Head171 354 of 4 2.90Up
Eye89 124 of 4 1.52None
Thoracicoabdominal ganglion101 194 of 4 1.70None
Salivary gland11 41 of 4 0.20Down
Crop203 94 of 4 3.50Up
Midgut4 00 of 4 0.10Down
Tubule35 54 of 4 0.60Down
Hindgut123 104 of 4 2.10Up
Heart298 214 of 4 5.07Up
Fat body842 1274 of 414.29Up
Ovary1 00 of 4 0.00Down
Testis11 04 of 4 0.20Down
Male accessory glands5 21 of 4 0.10Down
Virgin spermatheca740 854 of 412.56Up
Mated spermatheca784 364 of 413.31Up
Adult carcass203 324 of 4 3.40Up
Larval CNS162 154 of 4 2.75Up
Larval Salivary gland12 14 of 4 0.22Down
Larval midgut1 10 of 4 0.03Down
Larval tubule102 224 of 4 1.70None
Larval hindgut17 34 of 4 0.29Down
Larval fat body639 274 of 410.90Up
Larval trachea30 44 of 4 0.52Down
Larval carcass27 24 of 4 0.47Down
S2 cells (growing)2 11 of 4 0.04Down
Whole fly58 74 of 4



seven-up (svp):

Annotation Number : CG11502
Flybase ID : FBgn0003651
Gbrowse : chr3R:8106831-8121860 (+) // 100.0 //
Probeset : 1635192_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
Homophila reports that CG11502 is a close match (9e-11) to human gene AHC;AHX;DAX1;NROB1 (NP_000466), a gene associated with Adrenal hypoplasia, congenital, with hypogonadotropic hypogonadism, 300200 (3);Dosage-sensitive sex reversal, 300018 (3).
BioGrid reports that CG11502 interacts with CG3166 CG3954 CG3954 CG3954 CG3954 CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG18085 CG15793 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6721 CG5163 CG6033 CG6033 CG6033 CG6033 CG33197 CG33197 CG10108 CG2368 CG9412 CG4380 Dmel CG33956 CG30149 .
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 2.40None
Head2 00 of 4 1.30None
Eye2 00 of 4 1.79None
Thoracicoabdominal ganglion5 11 of 4 3.30None
Salivary gland5 20 of 4 3.74None
Crop6 13 of 4 4.40Up
Midgut4 11 of 4 2.60None
Tubule3 00 of 4 2.30Up
Hindgut4 01 of 4 2.80Up
Heart2 01 of 4 1.92None
Fat body9 44 of 4 6.02Up
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.80None
Male accessory glands1 00 of 4 1.00None
Virgin spermatheca3 01 of 4 2.31None
Mated spermatheca6 02 of 4 4.47Up
Adult carcass5 10 of 4 3.60None
Larval CNS7 14 of 4 4.89Up
Larval Salivary gland3 11 of 4 2.03None
Larval midgut2 00 of 4 1.58None
Larval tubule3 00 of 4 2.50Up
Larval hindgut2 00 of 4 1.50None
Larval fat body6 12 of 4 4.30Up
Larval trachea0 00 of 4 0.29None
Larval carcass2 00 of 4 1.76None
S2 cells (growing)0 00 of 4 0.35None
Whole fly1 00 of 4

Looking for FBgn0003651. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime