FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003651 through 18771 annotations produced 3 hits

seven-up (svp):

Annotation Number : CG11502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003651
Gbrowse : chr3R:8106831-8121860 (+) // 100.0 //
Probeset : 1635192_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
Homophila reports that CG11502 is a close match (9e-11) to human gene AHC;AHX;DAX1;NROB1 (NP_000466), a gene associated with Adrenal hypoplasia, congenital, with hypogonadotropic hypogonadism, 300200 (3);Dosage-sensitive sex reversal, 300018 (3).
BioGrid reports that CG11502 interacts with CG3166 CG3954 CG3954 CG3954 CG3954 CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG18085 CG15793 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6721 CG5163 CG6033 CG6033 CG6033 CG6033 CG33197 CG33197 CG10108 CG2368 CG9412 CG4380 Dmel CG33956 CG30149 .
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	1 of 4	2.40	None
Head	2 ± 0	0 of 4	1.30	None
Eye	2 ± 0	0 of 4	1.79	None
Thoracicoabdominal ganglion	5 ± 1	1 of 4	3.30	None
Salivary gland	5 ± 2	0 of 4	3.74	None
Crop	6 ± 1	3 of 4	4.40	Up
Midgut	4 ± 1	1 of 4	2.60	None
Tubule	3 ± 0	0 of 4	2.30	Up
Hindgut	4 ± 0	1 of 4	2.80	Up
Heart	2 ± 0	1 of 4	1.92	None
Fat body	9 ± 4	4 of 4	6.02	Up
Ovary	0 ± 0	0 of 4	0.10	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	1 ± 0	0 of 4	1.00	None
Virgin spermatheca	3 ± 0	1 of 4	2.31	None
Mated spermatheca	6 ± 0	2 of 4	4.47	Up
Adult carcass	5 ± 1	0 of 4	3.60	None
Larval CNS	7 ± 1	4 of 4	4.89	Up
Larval Salivary gland	3 ± 1	1 of 4	2.03	None
Larval midgut	2 ± 0	0 of 4	1.58	None
Larval tubule	3 ± 0	0 of 4	2.50	Up
Larval hindgut	2 ± 0	0 of 4	1.50	None
Larval fat body	6 ± 1	2 of 4	4.30	Up
Larval trachea	0 ± 0	0 of 4	0.29	None
Larval carcass	2 ± 0	0 of 4	1.76	None
S2 cells (growing)	0 ± 0	0 of 4	0.35	None
Whole fly	1 ± 0	0 of 4

seven-up (svp):

Annotation Number : CT40960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003651
Gbrowse : chr3R:8126904-8127572 (+) // 100.0 //
Probeset : 1626594_s_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 0	4 of 4	1.80	Up
Head	22 ± 4	4 of 4	1.80	None
Eye	12 ± 1	3 of 4	0.98	None
Thoracicoabdominal ganglion	23 ± 2	4 of 4	1.90	Up
Salivary gland	13 ± 3	1 of 4	1.06	None
Crop	31 ± 2	4 of 4	2.50	Up
Midgut	3 ± 1	0 of 4	0.30	Down
Tubule	4 ± 0	0 of 4	0.40	Down
Hindgut	20 ± 1	4 of 4	1.70	Up
Heart	19 ± 0	4 of 4	1.60	Up
Fat body	78 ± 21	4 of 4	6.35	Up
Ovary	3 ± 0	0 of 4	0.30	Down
Testis	12 ± 1	4 of 4	1.00	None
Male accessory glands	7 ± 1	0 of 4	0.60	Down
Virgin spermatheca	15 ± 1	4 of 4	1.27	None
Mated spermatheca	19 ± 0	4 of 4	1.60	Up
Adult carcass	57 ± 7	4 of 4	4.60	Up
Larval CNS	14 ± 1	4 of 4	1.15	None
Larval Salivary gland	7 ± 3	0 of 4	0.56	None
Larval midgut	7 ± 1	0 of 4	0.56	None
Larval tubule	10 ± 2	1 of 4	0.80	None
Larval hindgut	6 ± 1	1 of 4	0.51	Down
Larval fat body	74 ± 5	4 of 4	6.00	Up
Larval trachea	5 ± 1	1 of 4	0.46	Down
Larval carcass	5 ± 1	1 of 4	0.45	Down
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	12 ± 1	3 of 4

seven-up (svp):

Annotation Number : CG11502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003651
Gbrowse : chr3R:8084470-8128509 (+) // 100.0 //
Probeset : 1628779_a_at
Accessions : protein= NP_524325; /// NP_731681; /// NP_731682;, nucleotide= NM_079601; /// NM_169458; /// NM_169459;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007270 // nerve-nerve synaptic transmission // inferred from
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003651.
BDGP gene expression has embryonic in situ data for svp: 10 pix of staining in 1 body parts.
Homophila reports that CG11502 is a close match (9e-11) to human gene AHC;AHX;DAX1;NROB1 (NP_000466), a gene associated with Adrenal hypoplasia, congenital, with hypogonadotropic hypogonadism, 300200 (3);Dosage-sensitive sex reversal, 300018 (3).
BioGrid reports that CG11502 interacts with CG3166 CG3954 CG3954 CG3954 CG3954 CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG12559 CG12559 CG12559 CG12559 CG12559 CG12559 CG18085 CG15793 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG6721 CG5163 CG6033 CG6033 CG6033 CG6033 CG33197 CG33197 CG10108 CG2368 CG9412 CG4380 Dmel CG33956 CG30149 .
TRiP has 1 RNAi stocks for FBgn0003651 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003651 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	89 ± 8	4 of 4	1.50	Up
Head	171 ± 35	4 of 4	2.90	Up
Eye	89 ± 12	4 of 4	1.52	None
Thoracicoabdominal ganglion	101 ± 19	4 of 4	1.70	None
Salivary gland	11 ± 4	1 of 4	0.20	Down
Crop	203 ± 9	4 of 4	3.50	Up
Midgut	4 ± 0	0 of 4	0.10	Down
Tubule	35 ± 5	4 of 4	0.60	Down
Hindgut	123 ± 10	4 of 4	2.10	Up
Heart	298 ± 21	4 of 4	5.07	Up
Fat body	842 ± 127	4 of 4	14.29	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	11 ± 0	4 of 4	0.20	Down
Male accessory glands	5 ± 2	1 of 4	0.10	Down
Virgin spermatheca	740 ± 85	4 of 4	12.56	Up
Mated spermatheca	784 ± 36	4 of 4	13.31	Up
Adult carcass	203 ± 32	4 of 4	3.40	Up
Larval CNS	162 ± 15	4 of 4	2.75	Up
Larval Salivary gland	12 ± 1	4 of 4	0.22	Down
Larval midgut	1 ± 1	0 of 4	0.03	Down
Larval tubule	102 ± 22	4 of 4	1.70	None
Larval hindgut	17 ± 3	4 of 4	0.29	Down
Larval fat body	639 ± 27	4 of 4	10.90	Up
Larval trachea	30 ± 4	4 of 4	0.52	Down
Larval carcass	27 ± 2	4 of 4	0.47	Down
S2 cells (growing)	2 ± 1	1 of 4	0.04	Down
Whole fly	58 ± 7	4 of 4

Looking for FBgn0003651. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720