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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003654 through 18771 annotations produced 1 hits



Sdic:CG32823 /// Sdic:CG33499 /// dynein (Sdic3 /// Sdic4 /// sw):

Annotation Number : CG18000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003654 /// FBgn0052823 /// FBgn0053499
Gbrowse : chrX:20099186-20107239 (-) // 100.0 // /// chrX:20075753-20080296 (-) // 81.66 // /// chrX:20091312-20095855 (-) // 81.66 // /// chrUextra:530266-531643 (-) // 48.79 //
Probeset : 1628129_a_at
Accessions : protein= NP_477069; /// NP_477070; /// NP_477071; /// NP_477072; /// NP_477073; /// NP_477074; /// NP_477075; /// NP_477076; /// NP_477077; /// NP_477078; /// NP_477079; /// NP_728323; /// NP_996519; /// NP_996521; /// NP_996522;, nucleotide= NM_057721; /// NM_057722; /// NM_057723; /// NM_057724; /// NM_057725; /// NM_057726; /// NM_057727; /// NM_057728; /// NM_057729; /// NM_057730; /// NM_057731; /// NM_167693; /// NM_206796; /// NM_206798; /// NM_206799;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0003774 // motor activity // inferred from electronic annotation /// 0003777 // microtubule motor activity // non-tracea
FlyMine data for FBgn0003654 /// FBgn0052823 /// FBgn0053499.
Homophila reports that CG18000 is a close match (1e-17) to human gene CILD1;DNAI1;ICS;PCD (NP_036276), a gene associated with Ciliary dyskinesia, primary, 1, 242650 (3);Kartagener syndrome, 244400 (3).
BioGrid reports that CG18000 interacts with CG7229 CG9206 CG9206 CG9206 CG9206 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain770 194 of 4 1.80Up
Head474 194 of 4 1.10None
Eye467 24 of 4 1.09None
Thoracicoabdominal ganglion834 224 of 4 1.90Up
Salivary gland505 254 of 4 1.17None
Crop668 184 of 4 1.60Up
Midgut422 94 of 4 1.00None
Tubule407 224 of 4 0.90None
Hindgut659 314 of 4 1.50Up
Heart384 144 of 4 0.89None
Fat body447 174 of 4 1.04None
Ovary375 64 of 4 0.90None
Testis1596 244 of 4 3.70Up
Male accessory glands274 94 of 4 0.60Down
Virgin spermatheca351 134 of 4 0.82None
Mated spermatheca359 184 of 4 0.84None
Adult carcass371 284 of 4 0.90None
Larval CNS546 134 of 4 1.27None
Larval Salivary gland659 54 of 4 1.53Up
Larval midgut570 204 of 4 1.33Up
Larval tubule826 244 of 4 1.90Up
Larval hindgut1010 254 of 4 2.35Up
Larval fat body668 894 of 4 1.60None
Larval trachea951 624 of 4 2.21Up
Larval carcass815 464 of 4 1.90Up
S2 cells (growing)360 34 of 4 0.84None
Whole fly430 424 of 4

Looking for FBgn0003654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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