FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003655 through 18771 annotations produced 1 hits

chrX:6257451-6259742 (-) // 100.0 // (swallow):

Annotation Number : CG3429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633458_at
Accessions : protein= , nucleotide= NP_511060;
Pathway : "0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotat
Interpro : embryo // inferred from genetic interaction /// 0019094 // pole plasm mRNA localization // inferred from mutant phenoty
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	2 of 4	0.00	Down
Head	7 ± 1	3 of 4	0.00	Down
Eye	5 ± 1	0 of 4	0.01	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.00	Down
Salivary gland	5 ± 1	0 of 4	0.02	Down
Crop	8 ± 1	2 of 4	0.00	Down
Midgut	7 ± 0	0 of 4	0.00	Down
Tubule	15 ± 9	0 of 4	0.00	Down
Hindgut	6 ± 0	0 of 4	0.00	Down
Heart	5 ± 1	1 of 4	0.01	Down
Fat body	14 ± 8	3 of 4	0.04	Down
Ovary	931 ± 11	4 of 4	2.40	Up
Testis	15 ± 1	4 of 4	0.00	Down
Male accessory glands	5 ± 2	1 of 4	0.00	Down
Virgin spermatheca	15 ± 1	2 of 4	0.04	Down
Mated spermatheca	11 ± 3	3 of 4	0.03	Down
Adult carcass	26 ± 8	3 of 4	0.10	Down
Larval CNS	5 ± 2	1 of 4	0.02	Down
Larval Salivary gland	2 ± 0	0 of 4	0.01	Down
Larval midgut	12 ± 3	1 of 4	0.03	Down
Larval tubule	6 ± 1	1 of 4	0.00	Down
Larval hindgut	7 ± 0	2 of 4	0.02	Down
Larval fat body	13 ± 2	1 of 4	0.00	Down
Larval trachea	4 ± 4	1 of 4	0.01	Down
Larval carcass	5 ± 2	0 of 4	0.01	Down
S2 cells (growing)	33 ± 2	4 of 4	0.09	Down
Whole fly	386 ± 25	4 of 4

Looking for FBgn0003655. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720