FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003676 through 18771 annotations produced 1 hits

Tcp1-like (T-cp1):

Annotation Number : CG5374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003676
Gbrowse : chr3R:18314806-18317153 (-) // 100.0 //
Probeset : 1627638_s_at
Accessions : protein= NP_524450; /// NP_732748;, nucleotide= NM_079726; /// NM_170016;
Pathway : engulfment // inferred from mutant phenotype /// 0007052 // mitotic spindle organization // inferred from mutant phenot
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0005753 // mitochondrial proton-transporting ATP synthas
FlyMine data for FBgn0003676.
BDGP gene expression has embryonic in situ data for T-cp1: 16 pix of staining in 10 body parts.
Homophila reports that CG5374 is a close match (4e-60) to human gene CCT5;CCTE;KIAA0098 (NP_036205), a gene associated with Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3).
TRiP has 1 RNAi stocks for FBgn0003676 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003676 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	229 ± 6	4 of 4	0.20	Down
Head	222 ± 5	4 of 4	0.20	Down
Eye	152 ± 5	4 of 4	0.16	Down
Thoracicoabdominal ganglion	366 ± 4	4 of 4	0.40	Down
Salivary gland	239 ± 6	4 of 4	0.25	Down
Crop	490 ± 18	4 of 4	0.50	Down
Midgut	578 ± 28	4 of 4	0.60	Down
Tubule	797 ± 84	4 of 4	0.80	None
Hindgut	485 ± 16	4 of 4	0.50	Down
Heart	204 ± 10	4 of 4	0.22	Down
Fat body	240 ± 27	4 of 4	0.25	Down
Ovary	1438 ± 21	4 of 4	1.50	Up
Testis	277 ± 3	4 of 4	0.30	Down
Male accessory glands	566 ± 46	4 of 4	0.60	Down
Virgin spermatheca	408 ± 16	4 of 4	0.43	Down
Mated spermatheca	627 ± 20	4 of 4	0.66	Down
Adult carcass	241 ± 14	4 of 4	0.30	Down
Larval CNS	1240 ± 44	4 of 4	1.31	Up
Larval Salivary gland	943 ± 52	4 of 4	0.99	None
Larval midgut	461 ± 40	4 of 4	0.49	Down
Larval tubule	324 ± 3	4 of 4	0.30	Down
Larval hindgut	845 ± 73	4 of 4	0.89	None
Larval fat body	196 ± 12	4 of 4	0.20	Down
Larval trachea	898 ± 156	4 of 4	0.95	None
Larval carcass	939 ± 69	4 of 4	0.99	None
S2 cells (growing)	1249 ± 11	4 of 4	1.32	Up
Whole fly	949 ± 19	4 of 4

Looking for FBgn0003676. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720