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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003687 through 18771 annotations produced 1 hits



TATA-binding protein (Tbp):

Annotation Number : CG9874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003687
Gbrowse : chr2R:17573696-17575145 (-) // 100.0 //
Probeset : 1637663_at
Accessions : protein= NP_523805;, nucleotide= NM_079081;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0000126 // transcription factor TFIIIB complex // inferred from physical interaction /// 0005634 // nucleus // non-trace
FlyMine data for FBgn0003687.
BDGP gene expression has embryonic in situ data for Tbp: 8 pix of staining in 1 body parts.
Homophila reports that CG9874 is a close match (1e-84) to human gene SCA17;TBP (NP_003185), a gene associated with Huntington disease-like-4, 607136 (3);Parkinson disease, 168600 (3);Spinocerebellar ataxia 17, 607136 (3).
BioGrid reports that CG9874 interacts with CG3936 .
TRiP has 1 RNAi stocks for FBgn0003687 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 24 of 4 0.90None
Head36 ± 14 of 4 0.50Down
Eye47 ± 34 of 4 0.59Down
Thoracicoabdominal ganglion59 ± 04 of 4 0.70Down
Salivary gland78 ± 64 of 4 0.98None
Crop57 ± 44 of 4 0.70Down
Midgut38 ± 24 of 4 0.50Down
Tubule45 ± 24 of 4 0.60Down
Hindgut44 ± 24 of 4 0.60Down
Heart36 ± 14 of 4 0.45Down
Fat body21 ± 40 of 4 0.26Down
Ovary240 ± 44 of 4 3.00Up
Testis16 ± 14 of 4 0.20Down
Male accessory glands61 ± 24 of 4 0.80Down
Virgin spermatheca25 ± 14 of 4 0.32Down
Mated spermatheca22 ± 14 of 4 0.29Down
Adult carcass30 ± 14 of 4 0.40Down
Larval CNS108 ± 44 of 4 1.35Up
Larval Salivary gland84 ± 74 of 4 1.06None
Larval midgut25 ± 13 of 4 0.32Down
Larval tubule43 ± 34 of 4 0.50Down
Larval hindgut42 ± 34 of 4 0.53Down
Larval fat body34 ± 54 of 4 0.40Down
Larval trachea86 ± 64 of 4 1.08None
Larval carcass41 ± 34 of 4 0.51Down
S2 cells (growing)89 ± 74 of 4 1.12None
Whole fly80 ± 44 of 4

Looking for FBgn0003687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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