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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003701 through 18771 annotations produced 1 hits



three rows (thr):

Annotation Number : CG5785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003701
Gbrowse : chr2R:13748982-13753504 (-) // 100.0 //
Probeset : 1634727_a_at
Accessions : protein= NP_725731;, nucleotide= NM_166257;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0003701.
BioGrid reports that CG5785 interacts with CG10583 .
VDRC has 4 RNAi stocks for FBgn0003701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.10Down
Head5 21 of 4 0.10Down
Eye3 00 of 4 0.03Down
Thoracicoabdominal ganglion13 22 of 4 0.10Down
Salivary gland18 20 of 4 0.16Down
Crop7 11 of 4 0.10Down
Midgut9 00 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut9 10 of 4 0.10Down
Heart5 00 of 4 0.05Down
Fat body8 30 of 4 0.08Down
Ovary360 74 of 4 3.20Up
Testis69 64 of 4 0.60Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca7 10 of 4 0.06Down
Mated spermatheca4 10 of 4 0.04Down
Adult carcass11 21 of 4 0.10Down
Larval CNS93 74 of 4 0.82None
Larval Salivary gland11 11 of 4 0.10Down
Larval midgut9 20 of 4 0.08Down
Larval tubule7 11 of 4 0.10Down
Larval hindgut9 12 of 4 0.08Down
Larval fat body18 41 of 4 0.20Down
Larval trachea15 23 of 4 0.13Down
Larval carcass15 12 of 4 0.14Down
S2 cells (growing)63 24 of 4 0.56Down
Whole fly114 134 of 4

Looking for FBgn0003701. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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