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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003710 through 18771 annotations produced 2 hits



/// temperature-induced paralysis locus E (CG18675 /// tipE):

Annotation Number : CG18675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003710 /// FBgn0040696
Gbrowse : chr3L:4173852-4192968 (+) // 100.0 //
Probeset : 1624098_s_at
Accessions : protein= NP_523920; /// NP_652334; /// NP_728952;, nucleotide= NM_079196; /// NM_144077; /// NM_168067;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0090072 // positive regulation of sodium io
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003710 /// FBgn0040696.
BioGrid reports that CG18675 interacts with CG6607 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 44 of 4 3.40Up
Head42 84 of 4 0.70None
Eye34 44 of 4 0.59Down
Thoracicoabdominal ganglion235 244 of 4 4.10Up
Salivary gland17 11 of 4 0.31Down
Crop2 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart2 10 of 4 0.04Down
Fat body5 30 of 4 0.09Down
Ovary0 00 of 4 0.00Down
Testis871 224 of 415.00Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca6 10 of 4 0.10Down
Mated spermatheca4 21 of 4 0.08Down
Adult carcass5 20 of 4 0.10Down
Larval CNS49 94 of 4 0.85None
Larval Salivary gland4 10 of 4 0.08Down
Larval midgut1 10 of 4 0.03Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body104 613 of 4 1.80None
Larval trachea5 20 of 4 0.09Down
Larval carcass4 10 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly58 34 of 4



temperature-induced paralysis locus E (tipE):

Annotation Number : CG1232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003710
Gbrowse : chr3L:4188529-4193788 (+) // 100.0 //
Probeset : 1626200_s_at
Accessions : protein= NP_523920; /// NP_728952;, nucleotide= NM_079196; /// NM_168067;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0090072 // positive regulation of sodium io
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003710.
BDGP gene expression has embryonic in situ data for tipE: 43 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0003710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 204 of 415.00Up
Head58 64 of 4 4.10Up
Eye34 24 of 4 2.41Up
Thoracicoabdominal ganglion315 144 of 422.00Up
Salivary gland22 24 of 4 1.53None
Crop7 04 of 4 0.50Down
Midgut4 11 of 4 0.30Down
Tubule5 01 of 4 0.30Down
Hindgut4 01 of 4 0.30Down
Heart5 11 of 4 0.41Down
Fat body8 34 of 4 0.61None
Ovary3 02 of 4 0.20Down
Testis8 04 of 4 0.60Down
Male accessory glands6 22 of 4 0.40Down
Virgin spermatheca3 11 of 4 0.26Down
Mated spermatheca6 03 of 4 0.43Down
Adult carcass15 24 of 4 1.10None
Larval CNS122 144 of 4 8.54Up
Larval Salivary gland6 12 of 4 0.42Down
Larval midgut4 00 of 4 0.32Down
Larval tubule4 01 of 4 0.30Down
Larval hindgut4 03 of 4 0.29Down
Larval fat body5 11 of 4 0.40Down
Larval trachea6 33 of 4 0.44Down
Larval carcass7 04 of 4 0.50Down
S2 cells (growing)2 02 of 4 0.19Down
Whole fly14 14 of 4

Looking for FBgn0003710. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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