FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003710 through 18771 annotations produced 2 hits

/// temperature-induced paralysis locus E (CG18675 /// tipE):

Annotation Number : CG18675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003710 /// FBgn0040696
Gbrowse : chr3L:4173852-4192968 (+) // 100.0 //
Probeset : 1624098_s_at
Accessions : protein= NP_523920; /// NP_652334; /// NP_728952;, nucleotide= NM_079196; /// NM_144077; /// NM_168067;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0090072 // positive regulation of sodium io
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003710 /// FBgn0040696.
BioGrid reports that CG18675 interacts with CG6607 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	197 ± 4	4 of 4	3.40	Up
Head	42 ± 8	4 of 4	0.70	None
Eye	34 ± 4	4 of 4	0.59	Down
Thoracicoabdominal ganglion	235 ± 24	4 of 4	4.10	Up
Salivary gland	17 ± 1	1 of 4	0.31	Down
Crop	2 ± 1	0 of 4	0.00	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	2 ± 1	0 of 4	0.04	Down
Fat body	5 ± 3	0 of 4	0.09	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	871 ± 22	4 of 4	15.00	Up
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	6 ± 1	0 of 4	0.10	Down
Mated spermatheca	4 ± 2	1 of 4	0.08	Down
Adult carcass	5 ± 2	0 of 4	0.10	Down
Larval CNS	49 ± 9	4 of 4	0.85	None
Larval Salivary gland	4 ± 1	0 of 4	0.08	Down
Larval midgut	1 ± 1	0 of 4	0.03	Down
Larval tubule	0 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.03	Down
Larval fat body	104 ± 61	3 of 4	1.80	None
Larval trachea	5 ± 2	0 of 4	0.09	Down
Larval carcass	4 ± 1	0 of 4	0.07	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	58 ± 3	4 of 4

temperature-induced paralysis locus E (tipE):

Annotation Number : CG1232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003710
Gbrowse : chr3L:4188529-4193788 (+) // 100.0 //
Probeset : 1626200_s_at
Accessions : protein= NP_523920; /// NP_728952;, nucleotide= NM_079196; /// NM_168067;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0090072 // positive regulation of sodium io
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0003710.
BDGP gene expression has embryonic in situ data for tipE: 43 pix of staining in 21 body parts.
TRiP has 1 RNAi stocks for FBgn0003710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003710 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	214 ± 20	4 of 4	15.00	Up
Head	58 ± 6	4 of 4	4.10	Up
Eye	34 ± 2	4 of 4	2.41	Up
Thoracicoabdominal ganglion	315 ± 14	4 of 4	22.00	Up
Salivary gland	22 ± 2	4 of 4	1.53	None
Crop	7 ± 0	4 of 4	0.50	Down
Midgut	4 ± 1	1 of 4	0.30	Down
Tubule	5 ± 0	1 of 4	0.30	Down
Hindgut	4 ± 0	1 of 4	0.30	Down
Heart	5 ± 1	1 of 4	0.41	Down
Fat body	8 ± 3	4 of 4	0.61	None
Ovary	3 ± 0	2 of 4	0.20	Down
Testis	8 ± 0	4 of 4	0.60	Down
Male accessory glands	6 ± 2	2 of 4	0.40	Down
Virgin spermatheca	3 ± 1	1 of 4	0.26	Down
Mated spermatheca	6 ± 0	3 of 4	0.43	Down
Adult carcass	15 ± 2	4 of 4	1.10	None
Larval CNS	122 ± 14	4 of 4	8.54	Up
Larval Salivary gland	6 ± 1	2 of 4	0.42	Down
Larval midgut	4 ± 0	0 of 4	0.32	Down
Larval tubule	4 ± 0	1 of 4	0.30	Down
Larval hindgut	4 ± 0	3 of 4	0.29	Down
Larval fat body	5 ± 1	1 of 4	0.40	Down
Larval trachea	6 ± 3	3 of 4	0.44	Down
Larval carcass	7 ± 0	4 of 4	0.50	Down
S2 cells (growing)	2 ± 0	2 of 4	0.19	Down
Whole fly	14 ± 1	4 of 4

Looking for FBgn0003710. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720