FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003714 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein S12 (tko):

Annotation Number : CG7925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003714
Gbrowse : chrX:2336339-2338009 (-) // 100.0 //
Probeset : 1626534_at
Accessions : protein= NP_525050;, nucleotide= NM_080311;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0003714.
TRiP has 1 RNAi stocks for FBgn0003714 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003714 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	261 ± 5	4 of 4	0.80	Down
Head	227 ± 8	4 of 4	0.70	Down
Eye	214 ± 7	4 of 4	0.64	Down
Thoracicoabdominal ganglion	326 ± 5	4 of 4	1.00	None
Salivary gland	242 ± 6	4 of 4	0.73	Down
Crop	223 ± 1	4 of 4	0.70	Down
Midgut	306 ± 7	4 of 4	0.90	Down
Tubule	140 ± 1	4 of 4	0.40	Down
Hindgut	330 ± 12	4 of 4	1.00	None
Heart	240 ± 7	4 of 4	0.72	Down
Fat body	246 ± 27	4 of 4	0.74	Down
Ovary	431 ± 3	4 of 4	1.30	Up
Testis	63 ± 3	4 of 4	0.20	Down
Male accessory glands	221 ± 5	4 of 4	0.70	Down
Virgin spermatheca	144 ± 6	4 of 4	0.43	Down
Mated spermatheca	159 ± 8	4 of 4	0.48	Down
Adult carcass	210 ± 6	4 of 4	0.60	Down
Larval CNS	325 ± 15	4 of 4	0.98	None
Larval Salivary gland	187 ± 9	4 of 4	0.56	Down
Larval midgut	156 ± 11	4 of 4	0.47	Down
Larval tubule	188 ± 4	4 of 4	0.60	Down
Larval hindgut	269 ± 22	4 of 4	0.81	None
Larval fat body	118 ± 8	4 of 4	0.40	Down
Larval trachea	334 ± 47	4 of 4	1.00	None
Larval carcass	195 ± 22	4 of 4	0.59	Down
S2 cells (growing)	259 ± 8	4 of 4	0.78	Down
Whole fly	334 ± 8	4 of 4

Looking for FBgn0003714. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720