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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003720 through 18771 annotations produced 1 hits



chr3R:26678089-26680095 (+) // 100.0 // (tailless):

Annotation Number : CG1378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635993_at
Accessions : protein= , nucleotide= NP_524596;
Pathway : "0001708 // cell fate specification // traceable author statement /// 0001746 // Bolwig's organ morphogenesis // traceab
Interpro : DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG1378 is a close match (4e-13) to human gene VDR (NP_001017535), a gene associated with Osteoporosis, involutional, 166710 (1) (?);Rickets, vitamin D-resistant, type IIA, 277440 (3).
BioGrid reports that CG1378 interacts with CG15478 CG31029 CG14126 CG17799 CG18347 CG2157 CG3114 CG5099 CG7583 CG7937 CG8854 CG12559 CG1389 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.20None
Head2 10 of 4 1.10None
Eye0 00 of 4 0.36None
Thoracicoabdominal ganglion2 10 of 4 1.30None
Salivary gland8 30 of 4 4.36None
Crop3 00 of 4 1.60None
Midgut1 00 of 4 0.50None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.43None
Fat body3 20 of 4 1.80None
Ovary1 00 of 4 0.50None
Testis2 10 of 4 1.40None
Male accessory glands2 10 of 4 1.10None
Virgin spermatheca0 00 of 4 0.40None
Mated spermatheca3 10 of 4 1.78None
Adult carcass1 00 of 4 0.90None
Larval CNS259 234 of 4128.27Up
Larval Salivary gland3 20 of 4 1.75None
Larval midgut2 10 of 4 1.04None
Larval tubule2 00 of 4 1.30None
Larval hindgut1 00 of 4 0.73None
Larval fat body3 10 of 4 1.50None
Larval trachea0 00 of 4 0.42None
Larval carcass3 10 of 4 1.88None
S2 cells (growing)1 00 of 4 0.49None
Whole fly2 10 of 4

Looking for FBgn0003720. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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