FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003721 through 18771 annotations produced 6 hits

Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107253-11133715 (+) // 100.0 //
Probeset : 1635584_s_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	107 ± 7	4 of 4	0.10	Down
Head	968 ± 60	4 of 4	1.00	None
Eye	415 ± 34	4 of 4	0.42	Down
Thoracicoabdominal ganglion	214 ± 11	4 of 4	0.20	Down
Salivary gland	47 ± 6	4 of 4	0.05	Down
Crop	5667 ± 375	4 of 4	5.70	Up
Midgut	781 ± 27	4 of 4	0.80	Down
Tubule	134 ± 10	4 of 4	0.10	Down
Hindgut	3656 ± 80	4 of 4	3.70	Up
Heart	3304 ± 183	4 of 4	3.35	Up
Fat body	203 ± 55	4 of 4	0.21	Down
Ovary	78 ± 8	4 of 4	0.10	Down
Testis	155 ± 7	4 of 4	0.20	Down
Male accessory glands	1573 ± 99	4 of 4	1.60	Up
Virgin spermatheca	173 ± 20	4 of 4	0.18	Down
Mated spermatheca	277 ± 24	4 of 4	0.28	Down
Adult carcass	2477 ± 182	4 of 4	2.50	Up
Larval CNS	90 ± 11	4 of 4	0.09	Down
Larval Salivary gland	59 ± 3	4 of 4	0.06	Down
Larval midgut	996 ± 32	4 of 4	1.01	None
Larval tubule	78 ± 7	4 of 4	0.10	Down
Larval hindgut	4092 ± 41	4 of 4	4.15	Up
Larval fat body	24 ± 7	4 of 4	0.00	Down
Larval trachea	1059 ± 553	4 of 4	1.07	None
Larval carcass	5110 ± 483	4 of 4	5.18	Up
S2 cells (growing)	13 ± 1	4 of 4	0.01	Down
Whole fly	986 ± 36	4 of 4

Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107273-11115209 (+) // 100.0 //
Probeset : 1625542_a_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 1	4 of 4	0.50	Down
Head	20 ± 4	4 of 4	0.50	Down
Eye	9 ± 1	3 of 4	0.26	Down
Thoracicoabdominal ganglion	19 ± 2	4 of 4	0.50	Down
Salivary gland	40 ± 3	4 of 4	1.12	None
Crop	77 ± 8	4 of 4	2.10	Up
Midgut	35 ± 4	4 of 4	1.00	None
Tubule	10 ± 0	1 of 4	0.30	Down
Hindgut	44 ± 1	4 of 4	1.20	Up
Heart	12 ± 0	4 of 4	0.35	Down
Fat body	14 ± 5	2 of 4	0.40	Down
Ovary	55 ± 4	4 of 4	1.50	Up
Testis	15 ± 1	4 of 4	0.40	Down
Male accessory glands	20 ± 2	2 of 4	0.60	Down
Virgin spermatheca	2 ± 1	0 of 4	0.07	Down
Mated spermatheca	4 ± 1	0 of 4	0.11	Down
Adult carcass	38 ± 2	4 of 4	1.10	None
Larval CNS	13 ± 1	4 of 4	0.38	Down
Larval Salivary gland	29 ± 2	3 of 4	0.82	Down
Larval midgut	17 ± 3	3 of 4	0.48	Down
Larval tubule	28 ± 2	4 of 4	0.80	Down
Larval hindgut	41 ± 2	4 of 4	1.14	None
Larval fat body	30 ± 1	4 of 4	0.80	Down
Larval trachea	5 ± 2	0 of 4	0.16	Down
Larval carcass	33 ± 3	4 of 4	0.93	None
S2 cells (growing)	72 ± 3	4 of 4	2.00	Up
Whole fly	36 ± 1	4 of 4

Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11116667-11130694 (+) // 100.0 //
Probeset : 1636332_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	238 ± 3	4 of 4	0.40	Down
Head	238 ± 11	4 of 4	0.40	Down
Eye	338 ± 6	4 of 4	0.60	Down
Thoracicoabdominal ganglion	320 ± 8	4 of 4	0.60	Down
Salivary gland	636 ± 9	4 of 4	1.13	None
Crop	566 ± 20	4 of 4	1.00	None
Midgut	1476 ± 65	4 of 4	2.60	Up
Tubule	703 ± 12	4 of 4	1.20	Up
Hindgut	681 ± 5	4 of 4	1.20	None
Heart	449 ± 16	4 of 4	0.80	None
Fat body	411 ± 51	4 of 4	0.73	None
Ovary	590 ± 41	4 of 4	1.00	None
Testis	180 ± 8	4 of 4	0.30	Down
Male accessory glands	930 ± 39	4 of 4	1.70	Up
Virgin spermatheca	662 ± 42	4 of 4	1.18	None
Mated spermatheca	737 ± 32	4 of 4	1.31	Up
Adult carcass	244 ± 8	4 of 4	0.40	Down
Larval CNS	897 ± 15	4 of 4	1.59	Up
Larval Salivary gland	3840 ± 136	4 of 4	6.81	Up
Larval midgut	2031 ± 56	4 of 4	3.60	Up
Larval tubule	1375 ± 35	4 of 4	2.40	Up
Larval hindgut	1720 ± 31	4 of 4	3.05	Up
Larval fat body	442 ± 30	4 of 4	0.80	None
Larval trachea	4023 ± 53	4 of 4	7.14	Up
Larval carcass	1343 ± 76	4 of 4	2.38	Up
S2 cells (growing)	968 ± 18	4 of 4	1.72	Up
Whole fly	563 ± 57	4 of 4

Tropomyosin (Tm1):

Annotation Number : S.C3R001542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11130904-11131633 (+) // 100.0 //
Probeset : 1641581_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.10	Down
Head	6 ± 3	0 of 4	0.20	Down
Eye	9 ± 1	0 of 4	0.35	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.10	Down
Salivary gland	3 ± 1	0 of 4	0.15	Down
Crop	5 ± 0	0 of 4	0.20	Down
Midgut	3 ± 0	0 of 4	0.10	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	9 ± 3	0 of 4	0.40	Down
Heart	5 ± 0	0 of 4	0.20	Down
Fat body	4 ± 3	0 of 4	0.18	Down
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	4 ± 1	0 of 4	0.20	Down
Virgin spermatheca	8 ± 3	0 of 4	0.33	Down
Mated spermatheca	9 ± 3	0 of 4	0.36	Down
Adult carcass	174 ± 15	4 of 4	6.60	Up
Larval CNS	3 ± 1	0 of 4	0.14	Down
Larval Salivary gland	4 ± 1	0 of 4	0.16	Down
Larval midgut	7 ± 2	0 of 4	0.29	Down
Larval tubule	7 ± 1	0 of 4	0.30	Down
Larval hindgut	2 ± 0	0 of 4	0.09	Down
Larval fat body	14 ± 7	0 of 4	0.60	None
Larval trachea	3 ± 2	0 of 4	0.14	Down
Larval carcass	11 ± 2	0 of 4	0.43	Down
S2 cells (growing)	4 ± 2	0 of 4	0.19	Down
Whole fly	26 ± 1	1 of 4

Tropomyosin (Tm1):

Annotation Number : HDC13727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11132094-11132848 (+) // 100.0 //
Probeset : 1640285_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 0	2 of 4	0.70	Down
Head	28 ± 4	0 of 4	0.80	None
Eye	17 ± 1	0 of 4	0.50	Down
Thoracicoabdominal ganglion	19 ± 4	2 of 4	0.60	Down
Salivary gland	44 ± 4	2 of 4	1.27	None
Crop	26 ± 2	2 of 4	0.80	None
Midgut	45 ± 3	2 of 4	1.30	None
Tubule	22 ± 1	0 of 4	0.60	Down
Hindgut	35 ± 3	1 of 4	1.00	None
Heart	22 ± 4	2 of 4	0.64	None
Fat body	34 ± 7	0 of 4	0.98	None
Ovary	24 ± 2	0 of 4	0.70	Down
Testis	15 ± 3	0 of 4	0.40	Down
Male accessory glands	53 ± 5	1 of 4	1.50	Up
Virgin spermatheca	29 ± 2	1 of 4	0.84	None
Mated spermatheca	27 ± 2	1 of 4	0.77	None
Adult carcass	45 ± 3	3 of 4	1.30	None
Larval CNS	19 ± 3	2 of 4	0.54	Down
Larval Salivary gland	60 ± 6	3 of 4	1.71	Up
Larval midgut	48 ± 5	0 of 4	1.38	None
Larval tubule	42 ± 1	4 of 4	1.20	None
Larval hindgut	31 ± 2	0 of 4	0.89	None
Larval fat body	44 ± 3	3 of 4	1.30	None
Larval trachea	19 ± 8	1 of 4	0.56	Down
Larval carcass	67 ± 4	3 of 4	1.92	Up
S2 cells (growing)	26 ± 1	0 of 4	0.75	None
Whole fly	35 ± 3	2 of 4

alpha-Tubulin /// Tropomyosin (alphaTub84D /// Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11112720-11123401 (+) // 99.89 //
Probeset : 1634906_at
Accessions : protein= NP_001163619; /// NP_524264; /// NP_524360; /// NP_731169; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079540; /// NM_079636; /// NM_169189; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from seque
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	90 ± 5	4 of 4	0.50	Down
Head	104 ± 4	4 of 4	0.60	Down
Eye	50 ± 4	4 of 4	0.27	Down
Thoracicoabdominal ganglion	81 ± 2	4 of 4	0.40	Down
Salivary gland	151 ± 6	4 of 4	0.82	Down
Crop	398 ± 16	4 of 4	2.10	Up
Midgut	217 ± 8	4 of 4	1.20	Up
Tubule	132 ± 5	4 of 4	0.70	Down
Hindgut	196 ± 10	4 of 4	1.10	None
Heart	94 ± 6	4 of 4	0.51	Down
Fat body	200 ± 13	4 of 4	1.08	None
Ovary	405 ± 24	4 of 4	2.20	Up
Testis	42 ± 3	4 of 4	0.20	Down
Male accessory glands	74 ± 2	4 of 4	0.40	Down
Virgin spermatheca	152 ± 20	4 of 4	0.82	None
Mated spermatheca	193 ± 14	4 of 4	1.04	None
Adult carcass	133 ± 9	4 of 4	0.70	Down
Larval CNS	162 ± 22	4 of 4	0.87	None
Larval Salivary gland	310 ± 41	4 of 4	1.67	None
Larval midgut	315 ± 30	4 of 4	1.70	Up
Larval tubule	153 ± 5	4 of 4	0.80	Down
Larval hindgut	368 ± 24	4 of 4	1.98	Up
Larval fat body	111 ± 4	4 of 4	0.60	Down
Larval trachea	71 ± 7	4 of 4	0.39	Down
Larval carcass	403 ± 65	4 of 4	2.17	Up
S2 cells (growing)	227 ± 17	4 of 4	1.22	None
Whole fly	186 ± 7	4 of 4

Looking for FBgn0003721. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720