Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003721 through 18771 annotations produced 6 hits



Tropomyosin (Tm1):

Annotation Number : HDC13727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11132094-11132848 (+) // 100.0 //
Probeset : 1640285_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 02 of 4 0.70Down
Head28 40 of 4 0.80None
Eye17 10 of 4 0.50Down
Thoracicoabdominal ganglion19 42 of 4 0.60Down
Salivary gland44 42 of 4 1.27None
Crop26 22 of 4 0.80None
Midgut45 32 of 4 1.30None
Tubule22 10 of 4 0.60Down
Hindgut35 31 of 4 1.00None
Heart22 42 of 4 0.64None
Fat body34 70 of 4 0.98None
Ovary24 20 of 4 0.70Down
Testis15 30 of 4 0.40Down
Male accessory glands53 51 of 4 1.50Up
Virgin spermatheca29 21 of 4 0.84None
Mated spermatheca27 21 of 4 0.77None
Adult carcass45 33 of 4 1.30None
Larval CNS19 32 of 4 0.54Down
Larval Salivary gland60 63 of 4 1.71Up
Larval midgut48 50 of 4 1.38None
Larval tubule42 14 of 4 1.20None
Larval hindgut31 20 of 4 0.89None
Larval fat body44 33 of 4 1.30None
Larval trachea19 81 of 4 0.56Down
Larval carcass67 43 of 4 1.92Up
S2 cells (growing)26 10 of 4 0.75None
Whole fly35 32 of 4



Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11116667-11130694 (+) // 100.0 //
Probeset : 1636332_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 34 of 4 0.40Down
Head238 114 of 4 0.40Down
Eye338 64 of 4 0.60Down
Thoracicoabdominal ganglion320 84 of 4 0.60Down
Salivary gland636 94 of 4 1.13None
Crop566 204 of 4 1.00None
Midgut1476 654 of 4 2.60Up
Tubule703 124 of 4 1.20Up
Hindgut681 54 of 4 1.20None
Heart449 164 of 4 0.80None
Fat body411 514 of 4 0.73None
Ovary590 414 of 4 1.00None
Testis180 84 of 4 0.30Down
Male accessory glands930 394 of 4 1.70Up
Virgin spermatheca662 424 of 4 1.18None
Mated spermatheca737 324 of 4 1.31Up
Adult carcass244 84 of 4 0.40Down
Larval CNS897 154 of 4 1.59Up
Larval Salivary gland3840 1364 of 4 6.81Up
Larval midgut2031 564 of 4 3.60Up
Larval tubule1375 354 of 4 2.40Up
Larval hindgut1720 314 of 4 3.05Up
Larval fat body442 304 of 4 0.80None
Larval trachea4023 534 of 4 7.14Up
Larval carcass1343 764 of 4 2.38Up
S2 cells (growing)968 184 of 4 1.72Up
Whole fly563 574 of 4



alpha-Tubulin /// Tropomyosin (alphaTub84D /// Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11112720-11123401 (+) // 99.89 //
Probeset : 1634906_at
Accessions : protein= NP_001163619; /// NP_524264; /// NP_524360; /// NP_731169; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079540; /// NM_079636; /// NM_169189; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from seque
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 54 of 4 0.50Down
Head104 44 of 4 0.60Down
Eye50 44 of 4 0.27Down
Thoracicoabdominal ganglion81 24 of 4 0.40Down
Salivary gland151 64 of 4 0.82Down
Crop398 164 of 4 2.10Up
Midgut217 84 of 4 1.20Up
Tubule132 54 of 4 0.70Down
Hindgut196 104 of 4 1.10None
Heart94 64 of 4 0.51Down
Fat body200 134 of 4 1.08None
Ovary405 244 of 4 2.20Up
Testis42 34 of 4 0.20Down
Male accessory glands74 24 of 4 0.40Down
Virgin spermatheca152 204 of 4 0.82None
Mated spermatheca193 144 of 4 1.04None
Adult carcass133 94 of 4 0.70Down
Larval CNS162 224 of 4 0.87None
Larval Salivary gland310 414 of 4 1.67None
Larval midgut315 304 of 4 1.70Up
Larval tubule153 54 of 4 0.80Down
Larval hindgut368 244 of 4 1.98Up
Larval fat body111 44 of 4 0.60Down
Larval trachea71 74 of 4 0.39Down
Larval carcass403 654 of 4 2.17Up
S2 cells (growing)227 174 of 4 1.22None
Whole fly186 74 of 4



Tropomyosin (Tm1):

Annotation Number : S.C3R001542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11130904-11131633 (+) // 100.0 //
Probeset : 1641581_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head6 30 of 4 0.20Down
Eye9 10 of 4 0.35Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland3 10 of 4 0.15Down
Crop5 00 of 4 0.20Down
Midgut3 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut9 30 of 4 0.40Down
Heart5 00 of 4 0.20Down
Fat body4 30 of 4 0.18Down
Ovary2 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca8 30 of 4 0.33Down
Mated spermatheca9 30 of 4 0.36Down
Adult carcass174 154 of 4 6.60Up
Larval CNS3 10 of 4 0.14Down
Larval Salivary gland4 10 of 4 0.16Down
Larval midgut7 20 of 4 0.29Down
Larval tubule7 10 of 4 0.30Down
Larval hindgut2 00 of 4 0.09Down
Larval fat body14 70 of 4 0.60None
Larval trachea3 20 of 4 0.14Down
Larval carcass11 20 of 4 0.43Down
S2 cells (growing)4 20 of 4 0.19Down
Whole fly26 11 of 4



Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107253-11133715 (+) // 100.0 //
Probeset : 1635584_s_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 74 of 4 0.10Down
Head968 604 of 4 1.00None
Eye415 344 of 4 0.42Down
Thoracicoabdominal ganglion214 114 of 4 0.20Down
Salivary gland47 64 of 4 0.05Down
Crop5667 3754 of 4 5.70Up
Midgut781 274 of 4 0.80Down
Tubule134 104 of 4 0.10Down
Hindgut3656 804 of 4 3.70Up
Heart3304 1834 of 4 3.35Up
Fat body203 554 of 4 0.21Down
Ovary78 84 of 4 0.10Down
Testis155 74 of 4 0.20Down
Male accessory glands1573 994 of 4 1.60Up
Virgin spermatheca173 204 of 4 0.18Down
Mated spermatheca277 244 of 4 0.28Down
Adult carcass2477 1824 of 4 2.50Up
Larval CNS90 114 of 4 0.09Down
Larval Salivary gland59 34 of 4 0.06Down
Larval midgut996 324 of 4 1.01None
Larval tubule78 74 of 4 0.10Down
Larval hindgut4092 414 of 4 4.15Up
Larval fat body24 74 of 4 0.00Down
Larval trachea1059 5534 of 4 1.07None
Larval carcass5110 4834 of 4 5.18Up
S2 cells (growing)13 14 of 4 0.01Down
Whole fly986 364 of 4



Tropomyosin (Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11107273-11115209 (+) // 100.0 //
Probeset : 1625542_a_at
Accessions : protein= NP_001163619; /// NP_524360; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079636; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // traceable au
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.50Down
Head20 44 of 4 0.50Down
Eye9 13 of 4 0.26Down
Thoracicoabdominal ganglion19 24 of 4 0.50Down
Salivary gland40 34 of 4 1.12None
Crop77 84 of 4 2.10Up
Midgut35 44 of 4 1.00None
Tubule10 01 of 4 0.30Down
Hindgut44 14 of 4 1.20Up
Heart12 04 of 4 0.35Down
Fat body14 52 of 4 0.40Down
Ovary55 44 of 4 1.50Up
Testis15 14 of 4 0.40Down
Male accessory glands20 22 of 4 0.60Down
Virgin spermatheca2 10 of 4 0.07Down
Mated spermatheca4 10 of 4 0.11Down
Adult carcass38 24 of 4 1.10None
Larval CNS13 14 of 4 0.38Down
Larval Salivary gland29 23 of 4 0.82Down
Larval midgut17 33 of 4 0.48Down
Larval tubule28 24 of 4 0.80Down
Larval hindgut41 24 of 4 1.14None
Larval fat body30 14 of 4 0.80Down
Larval trachea5 20 of 4 0.16Down
Larval carcass33 34 of 4 0.93None
S2 cells (growing)72 34 of 4 2.00Up
Whole fly36 14 of 4

Looking for FBgn0003721. 6 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime