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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003733 through 18771 annotations produced 1 hits


torso (tor):

Annotation Number : CG1389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003733
Gbrowse : chr2R:3592677-3596696 (-) // 100.0 //
Probeset : 1638587_at
Accessions : protein= NP_001097211; /// NP_001097212; /// NP_476762;, nucleotide= NM_001103741; /// NM_001103742; /// NM_057414;
Pathway : embryo // traceable author statement /// 0030381 // chorion-containing eggshell pattern formation // inferred from muta
Interpro : 0005886 // plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotat
FlyMine data for FBgn0003733.
BDGP gene expression has embryonic in situ data for tor: 9 pix of staining in 5 body parts.
Homophila reports that CG1389 is a close match (3e-15) to human gene CRAF;NS5;RAF1 (NP_002871), a gene associated with LEOPARD syndrome 2, 611554 (3);Noonan syndrome 5, 611553 (3).
BioGrid reports that CG1389 interacts with CG4289 CG1034 CG3954 CG9885 CG9885 CG9885 CG9885 CG7952 CG9768 CG1242 CG2845 CG2845 CG9375 CG9375 CG12559 CG12559 CG12559 CG8049 CG14026 CG1378 CG17870 CG17870 CG15793 CG15793 CG15793 CG12399 CG9375 CG3715 CG4257 CG4257 CG10021 CG10021 CG7260 CG6033 CG6033 CG8817 CG31317 CG1921 CG6705 CG10619 CG31196 CG1044 .
TRiP has 3 RNAi stocks for FBgn0003733 available for purchase.
VDRC has 6 RNAi stocks for FBgn0003733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 20 of 4 0.04Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 10 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart45 ± 34 of 4 0.46Down
Fat body61 ± 124 of 4 0.63Down
Ovary291 ± 114 of 4 3.00Up
Testis4 ± 10 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.06Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass63 ± 24 of 4 0.60Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 10 of 4 0.05Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly98 ± 44 of 4

Looking for FBgn0003733. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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