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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003742 through 18771 annotations produced 1 hits



transformer-2 (tra2):

Annotation Number : CG10128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003742
Gbrowse : chr2R:10489508-10491857 (-) // 100.0 //
Probeset : 1639205_s_at
Accessions : protein= NP_476763; /// NP_476764; /// NP_476765; /// NP_476766; /// NP_599107; /// NP_995834; /// NP_995835;, nucleotide= NM_057415; /// NM_057416; /// NM_057417; /// NM_057418; /// NM_134280; /// NM_206112; /// NM_206113;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0003742.
BDGP gene expression has embryonic in situ data for tra2: 17 pix of staining in 3 body parts.
BioGrid reports that CG10128 interacts with CG33553 CG17136 CG10851 CG2199 CG4821 CG10851 .
TRiP has 1 RNAi stocks for FBgn0003742 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 74 of 4 0.80Down
Head103 64 of 4 0.50Down
Eye119 44 of 4 0.56Down
Thoracicoabdominal ganglion146 64 of 4 0.70Down
Salivary gland153 44 of 4 0.72Down
Crop123 44 of 4 0.60Down
Midgut111 24 of 4 0.50Down
Tubule99 24 of 4 0.50Down
Hindgut95 44 of 4 0.40Down
Heart102 74 of 4 0.48Down
Fat body103 34 of 4 0.49Down
Ovary429 44 of 4 2.00Up
Testis393 74 of 4 1.80Up
Male accessory glands256 64 of 4 1.20Up
Virgin spermatheca101 54 of 4 0.48Down
Mated spermatheca117 74 of 4 0.55Down
Adult carcass97 54 of 4 0.50Down
Larval CNS313 244 of 4 1.47Up
Larval Salivary gland183 74 of 4 0.86None
Larval midgut107 54 of 4 0.50Down
Larval tubule143 34 of 4 0.70Down
Larval hindgut114 24 of 4 0.54Down
Larval fat body139 224 of 4 0.70Down
Larval trachea185 44 of 4 0.87None
Larval carcass122 84 of 4 0.57Down
S2 cells (growing)323 104 of 4 1.51Up
Whole fly213 134 of 4

Looking for FBgn0003742. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime