FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003742 through 18771 annotations produced 1 hits

transformer-2 (tra2):

Annotation Number : CG10128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003742
Gbrowse : chr2R:10489508-10491857 (-) // 100.0 //
Probeset : 1639205_s_at
Accessions : protein= NP_476763; /// NP_476764; /// NP_476765; /// NP_476766; /// NP_599107; /// NP_995834; /// NP_995835;, nucleotide= NM_057415; /// NM_057416; /// NM_057417; /// NM_057418; /// NM_134280; /// NM_206112; /// NM_206113;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0003742.
BDGP gene expression has embryonic in situ data for tra2: 17 pix of staining in 3 body parts.
BioGrid reports that CG10128 interacts with CG33553 CG17136 CG10851 CG2199 CG4821 CG10851 .
TRiP has 1 RNAi stocks for FBgn0003742 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003742 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	160 ± 7	4 of 4	0.80	Down
Head	103 ± 6	4 of 4	0.50	Down
Eye	119 ± 4	4 of 4	0.56	Down
Thoracicoabdominal ganglion	146 ± 6	4 of 4	0.70	Down
Salivary gland	153 ± 4	4 of 4	0.72	Down
Crop	123 ± 4	4 of 4	0.60	Down
Midgut	111 ± 2	4 of 4	0.50	Down
Tubule	99 ± 2	4 of 4	0.50	Down
Hindgut	95 ± 4	4 of 4	0.40	Down
Heart	102 ± 7	4 of 4	0.48	Down
Fat body	103 ± 3	4 of 4	0.49	Down
Ovary	429 ± 4	4 of 4	2.00	Up
Testis	393 ± 7	4 of 4	1.80	Up
Male accessory glands	256 ± 6	4 of 4	1.20	Up
Virgin spermatheca	101 ± 5	4 of 4	0.48	Down
Mated spermatheca	117 ± 7	4 of 4	0.55	Down
Adult carcass	97 ± 5	4 of 4	0.50	Down
Larval CNS	313 ± 24	4 of 4	1.47	Up
Larval Salivary gland	183 ± 7	4 of 4	0.86	None
Larval midgut	107 ± 5	4 of 4	0.50	Down
Larval tubule	143 ± 3	4 of 4	0.70	Down
Larval hindgut	114 ± 2	4 of 4	0.54	Down
Larval fat body	139 ± 22	4 of 4	0.70	Down
Larval trachea	185 ± 4	4 of 4	0.87	None
Larval carcass	122 ± 8	4 of 4	0.57	Down
S2 cells (growing)	323 ± 10	4 of 4	1.51	Up
Whole fly	213 ± 13	4 of 4

Looking for FBgn0003742. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720