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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003748 through 18771 annotations produced 1 hits



chr2R:16961529-16975734 (+) // 100.0 // (trehalase):

Annotation Number : CG9364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635692_s_at
Accessions : protein= , nucleotide= NP_524821; /// NP_726023; /// NP_726024; /// NP_726025; /// NP_726026; /// NP_726027;
Pathway : 0005991 // trehalose metabolic process // inferred from sequence or structural similarity /// 0005991 // trehalose metab
Interpro : 0046658 // anchored to plasma membrane // inferred from sequence or structural similarity
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1356 ± 294 of 4 3.00Up
Head878 ± 314 of 4 1.90Up
Eye801 ± 444 of 4 1.76Up
Thoracicoabdominal ganglion1714 ± 574 of 4 3.80Up
Salivary gland1325 ± 864 of 4 2.90Up
Crop398 ± 104 of 4 0.90None
Midgut529 ± 224 of 4 1.20Up
Tubule189 ± 104 of 4 0.40Down
Hindgut862 ± 154 of 4 1.90Up
Heart665 ± 354 of 4 1.46Up
Fat body336 ± 74 of 4 0.74Down
Ovary348 ± 94 of 4 0.80Down
Testis534 ± 94 of 4 1.20Up
Male accessory glands692 ± 174 of 4 1.50Up
Virgin spermatheca507 ± 154 of 4 1.11None
Mated spermatheca386 ± 834 of 4 0.85None
Adult carcass611 ± 504 of 4 1.30Up
Larval CNS571 ± 654 of 4 1.25Up
Larval Salivary gland664 ± 294 of 4 1.45Up
Larval midgut171 ± 64 of 4 0.38Down
Larval tubule73 ± 94 of 4 0.20Down
Larval hindgut99 ± 94 of 4 0.22Down
Larval fat body257 ± 164 of 4 0.60Down
Larval trachea143 ± 244 of 4 0.31Down
Larval carcass233 ± 24 of 4 0.51Down
S2 cells (growing)235 ± 24 of 4 0.52Down
Whole fly456 ± 194 of 4

Looking for FBgn0003748. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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