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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003751 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:10271442-10272223 (-) // 100.0 //):

Annotation Number : CG5619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-36
Gbrowse :
Probeset : 1623731_at
Accessions : protein= , nucleotide=
Interpro : "0007275 // multicellular organismal development // inferred from electronic annotation /// 0007362 // terminal region d
FlyMine data for chr2-36.
BioGrid reports that CG5619 interacts with CG1034 CG1921 CG6705 CG6705 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 14 of 4 0.30Down
Head13 14 of 4 0.40Down
Eye11 14 of 4 0.33Down
Thoracicoabdominal ganglion14 04 of 4 0.40Down
Salivary gland5 20 of 4 0.14Down
Crop2 00 of 4 0.10Down
Midgut3 10 of 4 0.10Down
Tubule6 10 of 4 0.20Down
Hindgut13 14 of 4 0.40Down
Heart15 24 of 4 0.42Down
Fat body5 30 of 4 0.14Down
Ovary90 24 of 4 2.50Up
Testis5 02 of 4 0.20Down
Male accessory glands11 31 of 4 0.30Down
Virgin spermatheca9 20 of 4 0.25Down
Mated spermatheca3 00 of 4 0.09Down
Adult carcass6 10 of 4 0.20Down
Larval CNS5 03 of 4 0.16Down
Larval Salivary gland3 10 of 4 0.08Down
Larval midgut1 00 of 4 0.04Down
Larval tubule6 00 of 4 0.20Down
Larval hindgut7 01 of 4 0.20Down
Larval fat body4 10 of 4 0.10Down
Larval trachea3 20 of 4 0.11Down
Larval carcass4 11 of 4 0.12Down
S2 cells (growing)15 14 of 4 0.43Down
Whole fly36 24 of 4

Looking for FBgn0003751. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime