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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003861 through 18771 annotations produced 1 hits



chr3R:25740241-25746011 (-) // 100.0 // (Cosens-Manning mutant):

Annotation Number : CG7875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1622920_at
Accessions : protein= , nucleotide= NP_476768;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic ann
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
FlyMine data for full length.
Homophila reports that CG7875 is a close match (4e-114) to human gene FSGS2;TRP6;TRPC6 (NP_004612), a gene associated with Glomerulosclerosis, focal segmental, 2, 603965 (3).
BioGrid reports that CG7875 interacts with CG10966 CG11111 CG2457 CG18345 CG18345 CG18345 CG18345 CG18345 CG18345 CG18345 CG18345 CG18345 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 24 of 4 0.40Down
Head2649 744 of 414.10Up
Eye6507 354 of 434.54Up
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland5 20 of 4 0.03Down
Crop2 10 of 4 0.00Down
Midgut5 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart5 10 of 4 0.03Down
Fat body1 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca3 10 of 4 0.02Down
Adult carcass1 00 of 4 0.00Down
Larval CNS2 20 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut21 32 of 4 0.11Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.01Down
Larval fat body3 10 of 4 0.00Down
Larval trachea114 2221 of 4 0.61None
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly188 114 of 4

Looking for FBgn0003861. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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