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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003862 through 18771 annotations produced 1 hits



trithorax (trx):

Annotation Number : CG8651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003862
Gbrowse : chr3R:10089079-10112623 (-) // 100.0 //
Probeset : 1624533_s_at
Accessions : protein= NP_001014621; /// NP_476769; /// NP_476770; /// NP_599108; /// NP_599109;, nucleotide= NM_001014621; /// NM_057421; /// NM_057422; /// NM_134281; /// NM_134282;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0003862.
BDGP gene expression has embryonic in situ data for trx: 42 pix of staining in 15 body parts.
Homophila reports that CG8651 is a close match (2e-13) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG8651 interacts with CG11648 CG8787 CG8787 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG5942 CG4264 CG4264 CG32491 CG32491 CG32443 CG3978 CG9375 CG18085 CG1028 CG3938 CG12223 CG7776 CG6502 CG2674 CG32443 CG5109 CG3886 CG1064 CG3905 CG8887 CG8887 CG8887 CG8887 CG8887 CG8887 CG5942 CG5942 CG9696 CG14941 CG2252 CG9088 CG12058 CG12058 CG3895 CG18412 CG18412 CG17743 CG2759 CG2759 CG2759 CG2759 CG2759 CG3757 CG5595 CG33261 .
TRiP has 2 RNAi stocks for FBgn0003862 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain495 164 of 4 4.10Up
Head212 104 of 4 1.70Up
Eye235 104 of 4 1.92Up
Thoracicoabdominal ganglion364 174 of 4 3.00Up
Salivary gland335 184 of 4 2.74Up
Crop551 214 of 4 4.50Up
Midgut123 44 of 4 1.00None
Tubule122 74 of 4 1.00None
Hindgut274 114 of 4 2.20Up
Heart136 54 of 4 1.11None
Fat body140 164 of 4 1.15None
Ovary199 104 of 4 1.60Up
Testis22 14 of 4 0.20Down
Male accessory glands149 74 of 4 1.20Up
Virgin spermatheca338 254 of 4 2.77Up
Mated spermatheca346 314 of 4 2.83Up
Adult carcass174 34 of 4 1.40Up
Larval CNS521 644 of 4 4.26Up
Larval Salivary gland238 34 of 4 1.95Up
Larval midgut99 54 of 4 0.82None
Larval tubule108 34 of 4 0.90None
Larval hindgut177 34 of 4 1.45Up
Larval fat body70 64 of 4 0.60Down
Larval trachea317 314 of 4 2.60Up
Larval carcass183 74 of 4 1.50Up
S2 cells (growing)186 34 of 4 1.52Up
Whole fly122 74 of 4

Looking for FBgn0003862. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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