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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003863 through 18771 annotations produced 1 hits



alphaTrypsin (alphaTry):

Annotation Number : CG18444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003863
Gbrowse : chr2R:7231755-7232620 (-) // 100.0 //
Probeset : 1638196_at
Accessions : protein= NP_476771;, nucleotide= NM_057423;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0003863.
BDGP gene expression has embryonic in situ data for alphaTry: 4 pix of staining in 1 body parts.
Homophila reports that CG18444 is a close match (5e-12) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
BioGrid reports that CG18444 interacts with CG32096 .
VDRC has 1 RNAi stocks for FBgn0003863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head89 752 of 4 0.00Down
Eye69 421 of 4 0.02Down
Thoracicoabdominal ganglion14 20 of 4 0.00Down
Salivary gland23 31 of 4 0.01Down
Crop76 273 of 4 0.00Down
Midgut7256 934 of 4 1.70Up
Tubule58 123 of 4 0.00Down
Hindgut1268 724 of 4 0.30Down
Heart14 10 of 4 0.00Down
Fat body2 00 of 4 0.00Down
Ovary2 00 of 4 0.00Down
Testis31 281 of 4 0.00Down
Male accessory glands9 30 of 4 0.00Down
Virgin spermatheca9 30 of 4 0.00Down
Mated spermatheca6 20 of 4 0.00Down
Adult carcass83 282 of 4 0.00Down
Larval CNS1 00 of 4 0.00Down
Larval Salivary gland4 10 of 4 0.00Down
Larval midgut6151 2704 of 4 1.44Up
Larval tubule216 683 of 4 0.10Down
Larval hindgut756 1124 of 4 0.18Down
Larval fat body38 131 of 4 0.00Down
Larval trachea11 90 of 4 0.00Down
Larval carcass8 10 of 4 0.00Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly4284 1054 of 4

Looking for FBgn0003863. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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