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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003870 through 18771 annotations produced 2 hits



tramtrack (ttk):

Annotation Number : CG1856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003870
Gbrowse : chr3R:27539605-27561114 (+) // 100.0 //
Probeset : 1637917_s_at
Accessions : protein= NP_524911; /// NP_733443; /// NP_733444; /// NP_733445; /// NP_733446; /// NP_733447;, nucleotide= NM_080172; /// NM_170564; /// NM_170565; /// NM_170566; /// NM_170567; /// NM_170568;
Pathway : open tracheal system // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant
Interpro : open tracheal system // inferred from mutant phenotype /// 0035147 // branch fusion
FlyMine data for FBgn0003870.
BDGP gene expression has embryonic in situ data for ttk: 31 pix of staining in 29 body parts.
BioGrid reports that CG1856 interacts with CG5738 CG6459 CG6486 CG6741 CG7057 CG7386 CG2009 CG3018 CG31090 CG31365 CG32505 CG3371 CG4257 CG5441 CG5711 CG7200 CG8942 CG3796 CG3796 CG3166 CG3166 CG9375 CG1849 CG18085 CG9949 CG9949 CG1395 CG7583 CG7583 CG8103 CG2899 CG8817 CG5099 CG5099 CG10108 CG10108 CG10108 CG10108 Dmel CR31863 .
TRiP has 2 RNAi stocks for FBgn0003870 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 0.10Down
Head15 10 of 4 0.20Down
Eye20 12 of 4 0.31Down
Thoracicoabdominal ganglion9 00 of 4 0.10Down
Salivary gland44 51 of 4 0.66None
Crop45 24 of 4 0.70None
Midgut20 20 of 4 0.30Down
Tubule22 22 of 4 0.30Down
Hindgut22 02 of 4 0.30Down
Heart15 21 of 4 0.23Down
Fat body24 20 of 4 0.37Down
Ovary224 104 of 4 3.40Up
Testis36 34 of 4 0.50Down
Male accessory glands32 30 of 4 0.50Down
Virgin spermatheca26 22 of 4 0.39Down
Mated spermatheca25 10 of 4 0.38Down
Adult carcass27 32 of 4 0.40Down
Larval CNS24 32 of 4 0.37Down
Larval Salivary gland91 41 of 4 1.37None
Larval midgut23 20 of 4 0.35Down
Larval tubule32 14 of 4 0.50Down
Larval hindgut48 04 of 4 0.73None
Larval fat body56 34 of 4 0.80None
Larval trachea56 74 of 4 0.85None
Larval carcass70 24 of 4 1.05None
S2 cells (growing)54 24 of 4 0.82None
Whole fly66 94 of 4



tramtrack (ttk):

Annotation Number : CG1856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003870
Gbrowse : chr3R:27539605-27558117 (+) // 100.0 //
Probeset : 1636673_s_at
Accessions : protein= NP_524911; /// NP_733443; /// NP_733444; /// NP_733445; /// NP_733446; /// NP_733447;, nucleotide= NM_080172; /// NM_170564; /// NM_170565; /// NM_170566; /// NM_170567; /// NM_170568;
Pathway : open tracheal system // inferred from mutant phenotype /// 0008360 // regulation of cell shape // inferred from mutant
Interpro : open tracheal system // inferred from mutant phenotype /// 0035147 // branch fusion
FlyMine data for FBgn0003870.
BDGP gene expression has embryonic in situ data for ttk: 31 pix of staining in 29 body parts.
BioGrid reports that CG1856 interacts with CG5738 CG6459 CG6486 CG6741 CG7057 CG7386 CG2009 CG3018 CG31090 CG31365 CG32505 CG3371 CG4257 CG5441 CG5711 CG7200 CG8942 CG3796 CG3796 CG3166 CG3166 CG9375 CG1849 CG18085 CG9949 CG9949 CG1395 CG7583 CG7583 CG8103 CG2899 CG8817 CG5099 CG5099 CG10108 CG10108 CG10108 CG10108 Dmel CR31863 .
TRiP has 2 RNAi stocks for FBgn0003870 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 44 of 4 0.40Down
Head201 134 of 4 1.20None
Eye227 244 of 4 1.40None
Thoracicoabdominal ganglion66 34 of 4 0.40Down
Salivary gland543 254 of 4 3.35Up
Crop311 144 of 4 1.90Up
Midgut117 74 of 4 0.70Down
Tubule96 54 of 4 0.60Down
Hindgut216 44 of 4 1.30Up
Heart143 124 of 4 0.89None
Fat body239 144 of 4 1.47Up
Ovary208 124 of 4 1.30Up
Testis30 24 of 4 0.20Down
Male accessory glands319 124 of 4 2.00Up
Virgin spermatheca139 164 of 4 0.86None
Mated spermatheca166 64 of 4 1.02None
Adult carcass160 84 of 4 1.00None
Larval CNS81 24 of 4 0.50Down
Larval Salivary gland429 194 of 4 2.65Up
Larval midgut112 104 of 4 0.69Down
Larval tubule162 74 of 4 1.00None
Larval hindgut248 84 of 4 1.53Up
Larval fat body101 64 of 4 0.60Down
Larval trachea203 74 of 4 1.25Up
Larval carcass218 104 of 4 1.34Up
S2 cells (growing)286 84 of 4 1.77Up
Whole fly162 114 of 4

Looking for FBgn0003870. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime