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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003882 through 18771 annotations produced 1 hits



tube (tub):

Annotation Number : CG10520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003882
Gbrowse : chr3R:212966-215543 (+) // 100.0 //
Probeset : 1637314_at
Accessions : protein= NP_524222;, nucleotide= NM_079498;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from direct assay /// 000573
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred
FlyMine data for FBgn0003882.
BDGP gene expression has embryonic in situ data for tub: 20 pix of staining in 7 body parts.
BioGrid reports that CG10520 interacts with CG14225 CG8604 CG8863 CG5848 CG12058 .
TRiP has 1 RNAi stocks for FBgn0003882 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 24 of 4 1.20Up
Head158 ± 34 of 4 1.00None
Eye153 ± 94 of 4 0.95None
Thoracicoabdominal ganglion225 ± 84 of 4 1.40Up
Salivary gland84 ± 44 of 4 0.52Down
Crop177 ± 74 of 4 1.10None
Midgut123 ± 24 of 4 0.80Down
Tubule61 ± 14 of 4 0.40Down
Hindgut125 ± 24 of 4 0.80Down
Heart143 ± 24 of 4 0.89Down
Fat body212 ± 104 of 4 1.31Up
Ovary357 ± 64 of 4 2.20Up
Testis37 ± 24 of 4 0.20Down
Male accessory glands45 ± 24 of 4 0.30Down
Virgin spermatheca162 ± 44 of 4 1.01None
Mated spermatheca153 ± 44 of 4 0.95None
Adult carcass150 ± 84 of 4 0.90None
Larval CNS294 ± 104 of 4 1.82Up
Larval Salivary gland93 ± 34 of 4 0.58Down
Larval midgut159 ± 24 of 4 0.99None
Larval tubule89 ± 74 of 4 0.60Down
Larval hindgut159 ± 64 of 4 0.99None
Larval fat body491 ± 664 of 4 3.00Up
Larval trachea180 ± 144 of 4 1.12None
Larval carcass152 ± 44 of 4 0.94None
S2 cells (growing)229 ± 84 of 4 1.42Up
Whole fly161 ± 44 of 4

Looking for FBgn0003882. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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