Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003885 through 18771 annotations produced 2 hits



alpha-Tubulin /// Tropomyosin (alphaTub84D /// Tm1):

Annotation Number : CG4898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003721
Gbrowse : chr3R:11112720-11123401 (+) // 99.89 //
Probeset : 1634906_at
Accessions : protein= NP_001163619; /// NP_524264; /// NP_524360; /// NP_731169; /// NP_732001; /// NP_732002; /// NP_732003; /// NP_732004; /// NP_732005; /// NP_732006; /// NP_732007; /// NP_732008; /// NP_732009; /// NP_996216; /// NP_996217;, nucleotide= NM_001170148; /// NM_079540; /// NM_079636; /// NM_169189; /// NM_169633; /// NM_169634; /// NM_169635; /// NM_169636; /// NM_169637; /// NM_169638; /// NM_169639; /// NM_169640; /// NM_169641; /// NM_206494; /// NM_206495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from seque
FlyMine data for FBgn0003721.
Homophila reports that CG4898 is a close match (4e-11) to human gene CMD1Y;CMH3;TPM1 (NP_001018008), a gene associated with Cardiomyopathy, dilated, 1Y, 611878 (3);Cardiomyopathy, familial hypertrophic, 3, 115196 (3).
BioGrid reports that CG4898 interacts with CG4898 CG5338 CG5376 CG9401 CG10901 CG5771 CG3506 .
TRiP has 1 RNAi stocks for FBgn0003721 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain90 54 of 4 0.50Down
Head104 44 of 4 0.60Down
Eye50 44 of 4 0.27Down
Thoracicoabdominal ganglion81 24 of 4 0.40Down
Salivary gland151 64 of 4 0.82Down
Crop398 164 of 4 2.10Up
Midgut217 84 of 4 1.20Up
Tubule132 54 of 4 0.70Down
Hindgut196 104 of 4 1.10None
Heart94 64 of 4 0.51Down
Fat body200 134 of 4 1.08None
Ovary405 244 of 4 2.20Up
Testis42 34 of 4 0.20Down
Male accessory glands74 24 of 4 0.40Down
Virgin spermatheca152 204 of 4 0.82None
Mated spermatheca193 144 of 4 1.04None
Adult carcass133 94 of 4 0.70Down
Larval CNS162 224 of 4 0.87None
Larval Salivary gland310 414 of 4 1.67None
Larval midgut315 304 of 4 1.70Up
Larval tubule153 54 of 4 0.80Down
Larval hindgut368 244 of 4 1.98Up
Larval fat body111 44 of 4 0.60Down
Larval trachea71 74 of 4 0.39Down
Larval carcass403 654 of 4 2.17Up
S2 cells (growing)227 174 of 4 1.22None
Whole fly186 74 of 4



alpha-Tubulin (alphaTub84D):

Annotation Number : CG2512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003885
Gbrowse : chr3R:3356376-3358873 (+) // 100.0 //
Probeset : 1633624_s_at
Accessions : protein= NP_524264; /// NP_731169;, nucleotide= NM_079540; /// NM_169189;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005874 // microtubule // inferred from electronic annotatio
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0003885.
Homophila reports that CG2512 is a close match (0) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG2512 interacts with CG6020 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 54 of 4 8.40Up
Head17 14 of 4 1.70Up
Eye26 54 of 4 2.73None
Thoracicoabdominal ganglion34 54 of 4 3.50Up
Salivary gland30 23 of 4 3.13Up
Crop20 34 of 4 2.10None
Midgut14 33 of 4 1.50None
Tubule10 03 of 4 1.10None
Hindgut13 13 of 4 1.40Up
Heart14 24 of 4 1.48None
Fat body31 114 of 4 3.18Up
Ovary6 14 of 4 0.70None
Testis4 03 of 4 0.50Down
Male accessory glands20 34 of 4 2.10Up
Virgin spermatheca19 24 of 4 1.96Up
Mated spermatheca25 54 of 4 2.62Up
Adult carcass15 12 of 4 1.60Up
Larval CNS30 74 of 4 3.12Up
Larval Salivary gland11 14 of 4 1.17None
Larval midgut12 12 of 4 1.25None
Larval tubule10 24 of 4 1.00None
Larval hindgut10 23 of 4 1.04None
Larval fat body19 14 of 4 2.00Up
Larval trachea36 44 of 4 3.72Up
Larval carcass8 04 of 4 0.89None
S2 cells (growing)5 04 of 4 0.56Down
Whole fly9 14 of 4

Looking for FBgn0003885. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime