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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003891 through 18771 annotations produced 1 hits



chr2R:17070936-17079903 (+) // 100.0 // (tudor):

Annotation Number : CG9450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635340_at
Accessions : protein= , nucleotide= NP_476773;
Pathway : 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007277 // pole cell developm
Interpro : 0005739 // mitochondrion // traceable author statement /// 0043186 // P granule // inferred from direct assay /// 004318
FlyMine data for full length.
BioGrid reports that CG9450 interacts with CG5637 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain365 ± 104 of 4 1.80Up
Head286 ± 84 of 4 1.40Up
Eye663 ± 314 of 4 3.32Up
Thoracicoabdominal ganglion439 ± 124 of 4 2.20Up
Salivary gland347 ± 284 of 4 1.74Up
Crop560 ± 114 of 4 2.80Up
Midgut124 ± 104 of 4 0.60Down
Tubule574 ± 174 of 4 2.90Up
Hindgut412 ± 94 of 4 2.10Up
Heart505 ± 264 of 4 2.53Up
Fat body184 ± 184 of 4 0.92None
Ovary205 ± 74 of 4 1.00None
Testis134 ± 14 of 4 0.70Down
Male accessory glands242 ± 174 of 4 1.20None
Virgin spermatheca402 ± 204 of 4 2.01Up
Mated spermatheca429 ± 114 of 4 2.15Up
Adult carcass282 ± 284 of 4 1.40None
Larval CNS282 ± 294 of 4 1.41Up
Larval Salivary gland386 ± 104 of 4 1.93Up
Larval midgut234 ± 74 of 4 1.17Up
Larval tubule670 ± 414 of 4 3.40Up
Larval hindgut437 ± 164 of 4 2.19Up
Larval fat body462 ± 164 of 4 2.30Up
Larval trachea1173 ± 794 of 4 5.87Up
Larval carcass492 ± 274 of 4 2.46Up
S2 cells (growing)828 ± 124 of 4 4.15Up
Whole fly199 ± 54 of 4

Looking for FBgn0003891. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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