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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003892 through 18771 annotations produced 1 hits

tufted (ptc):

Annotation Number : CG2411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003892
Gbrowse : chr2R:4537926-4551841 (+) // 100.0 //
Probeset : 1639749_a_at
Accessions : protein= NP_523661;, nucleotide= NM_078937;
Pathway : imaginal disc // traceable author statement /// 0048100 // wing disc anterior/posterior pattern formation // traceable
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0005
FlyMine data for FBgn0003892.
Homophila reports that CG2411 is a close match (3e-14) to human gene NPC1L1 (NP_037521), a gene associated with [Ezetimibe, nonresponse to] (3).
BioGrid reports that CG2411 interacts with CG9885 CG9885 CG2706 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG10197 CG10197 CG3839 CG3978 CG6348 CG6348 CG11561 CG11561 CG11561 CG11561 CG11561 CG11561 CG5072 CG9096 CG3936 CG7413 CG6054 CG6054 CG6054 CG6054 CG7508 CG8224 CG2125 CG2125 CG2125 CG2125 CG2125 CG2125 CG2125 CG2125 CG9885 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG4637 CG10491 CG10491 CG7296 CG15861 CG5708 CG11138 CG12116 CG13806 CG32139 CG3018 CG7948 CG5568 CG15218 CG31679 CG2865 CG11963 CG12723 CG31811 CG8823 CG4673 CG17309 CG13900 CG1765 CG9027 CG13512 CG1946 CG5504 CG5504 .
TRiP has 1 RNAi stocks for FBgn0003892 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 23 of 4 1.00None
Head13 14 of 4 1.20None
Eye9 00 of 4 0.89None
Thoracicoabdominal ganglion10 10 of 4 1.00None
Salivary gland14 30 of 4 1.35None
Crop19 14 of 4 1.90Up
Midgut21 14 of 4 2.00Up
Tubule9 10 of 4 0.90None
Hindgut21 04 of 4 2.00Up
Heart2 00 of 4 0.26Down
Fat body20 63 of 4 1.90None
Ovary5 11 of 4 0.50None
Testis12 13 of 4 1.20None
Male accessory glands21 22 of 4 2.00Up
Virgin spermatheca13 10 of 4 1.32None
Mated spermatheca13 00 of 4 1.26None
Adult carcass23 42 of 4 2.30None
Larval CNS20 44 of 4 1.95Up
Larval Salivary gland18 11 of 4 1.72Up
Larval midgut18 13 of 4 1.74Up
Larval tubule15 14 of 4 1.50Up
Larval hindgut19 24 of 4 1.82Up
Larval fat body11 20 of 4 1.10None
Larval trachea14 32 of 4 1.34None
Larval carcass17 34 of 4 1.68None
S2 cells (growing)44 24 of 4 4.25Up
Whole fly10 12 of 4

Looking for FBgn0003892. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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