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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003942 through 18771 annotations produced 1 hits



chr2L:10408350-10410467 (+) // 100.0 // (arouser /// male female sterile 31):

Annotation Number : CG5271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624906_at
Accessions : protein= , nucleotide= NP_476778;
Pathway : "0006325 // chromatin organization // non-traceable author statement /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006412 // translation // inferred from sequence or structural simi
FlyMine data for full length.
BioGrid reports that CG5271 interacts with CG6667 CG7386 CG7546 CG7987 CG8079 CG9099 CG9119 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3257 744 of 4 0.70Down
Head5205 1944 of 4 1.10None
Eye5692 1434 of 4 1.22Up
Thoracicoabdominal ganglion4710 904 of 4 1.00None
Salivary gland12632 4164 of 4 2.70Up
Crop6799 3974 of 4 1.50Up
Midgut6050 1814 of 4 1.30Up
Tubule4356 924 of 4 0.90Down
Hindgut5622 1264 of 4 1.20Up
Heart6443 3894 of 4 1.38Up
Fat body6531 8204 of 4 1.40Up
Ovary3951 844 of 4 0.80None
Testis1653 874 of 4 0.40Down
Male accessory glands10384 1994 of 4 2.20Up
Virgin spermatheca5897 3034 of 4 1.26Up
Mated spermatheca5993 1224 of 4 1.28Up
Adult carcass6314 2904 of 4 1.40Up
Larval CNS3008 2274 of 4 0.64Down
Larval Salivary gland9045 4774 of 4 1.94Up
Larval midgut5509 1584 of 4 1.18None
Larval tubule5652 834 of 4 1.20Up
Larval hindgut4937 1134 of 4 1.06None
Larval fat body8813 8544 of 4 1.90Up
Larval trachea6319 134 of 4 1.35Up
Larval carcass5265 3934 of 4 1.13None
S2 cells (growing)4792 914 of 4 1.03None
Whole fly4673 2944 of 4

Looking for FBgn0003942. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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