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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003943 through 18771 annotations produced 1 hits



ubiquitin (Ubi-p63E):

Annotation Number : CG11624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003943
Gbrowse : chr3L:3899258-3903140 (-) // 100.0 //
Probeset : 1624230_s_at
Accessions : protein= NP_523909; /// NP_728908; /// NP_995994;, nucleotide= NM_079185; /// NM_168043; /// NM_206272;
Pathway : DNA-dependent // non-traceable author statement /// 0006412 // translation // inferred from electronic annotation /// 0
Interpro : engulfment // inferred from mutant phenotype /// 0006950 // response to stress // non-traceable author statement /// 00
FlyMine data for FBgn0003943.
BioGrid reports that CG11624 interacts with CG2684 CG32742 CG3099 CG3427 CG5111 CG8291 CG9986 .
TRiP has 1 RNAi stocks for FBgn0003943 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1479 414 of 4 0.70None
Head1774 704 of 4 0.80None
Eye2596 534 of 4 1.21None
Thoracicoabdominal ganglion1722 304 of 4 0.80None
Salivary gland1860 324 of 4 0.87None
Crop2901 1294 of 4 1.40Up
Midgut1935 614 of 4 0.90None
Tubule2292 1674 of 4 1.10None
Hindgut1865 184 of 4 0.90None
Heart2919 924 of 4 1.36Up
Fat body2693 2474 of 4 1.26None
Ovary1613 214 of 4 0.80None
Testis3628 1494 of 4 1.70Up
Male accessory glands2919 1094 of 4 1.40Up
Virgin spermatheca1866 754 of 4 0.87None
Mated spermatheca1856 894 of 4 0.87None
Adult carcass2406 584 of 4 1.10None
Larval CNS1480 924 of 4 0.69Down
Larval Salivary gland2380 1014 of 4 1.11None
Larval midgut3144 1614 of 4 1.47Up
Larval tubule2767 604 of 4 1.30Up
Larval hindgut2308 724 of 4 1.08None
Larval fat body2669 1814 of 4 1.20None
Larval trachea1425 1374 of 4 0.66Down
Larval carcass1907 1704 of 4 0.89None
S2 cells (growing)1583 224 of 4 0.74None
Whole fly2146 1844 of 4

Looking for FBgn0003943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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