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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003944 through 18771 annotations produced 1 hits



(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG10388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : Ubx
Gbrowse :
Probeset : 1633550_a_at
Accessions : protein= P83949, nucleotide=
FlyMine data for Ubx.
Homophila reports that CG10388 is a close match (7e-11) to human gene IPF1 (NP_000200), a gene associated with MODY, type IV (3);Pancreatic agenesis, 260370 (3);{Diabetes mellitus, type II, susceptibility to}, 125853 (3).
BioGrid reports that CG10388 interacts with CG31732 CG11164 CG13474 CG2109 CG4216 CG4568 CG7001 CG9392 CG10325 CG10325 CG11648 CG11648 CG1028 CG1028 CG6677 CG3193 CG32346 CG6315 CG17117 CG17117 CG3228 CG1264 CG1264 CG5109 CG8573 CG8573 CG12223 CG32346 CG4261 CG10377 CG3936 CG17704 CG8887 CG15319 CG8573 CG8573 CG8573 CG8573 CG3496 CG7803 CG7803 CG7803 CG7803 CG33261 CG33261 CG33261 CG33261 CG17686 CG17686 CG17686 CG31196 CG1101 CG4491 CG9704 CG1836 CG10149 CG1276 CG3935 CG11579 CG7035 CG15218 CG18361 CG2238 CG7254 CG6494 CG4264 CG6455 CG7892 CG12743 CG17484 CG7434 CG13389 CG2262 CG3998 CG5215 CG5393 CG17686 CG11901 CG8103 CG7398 CG3935 CG11579 CG7035 CG15218 CG18361 CG2238 CG6494 CG4264 CG4491 CG12743 CG1836 CG7434 CG13389 CG2262 CG31196 CG5393 CG3096 CG17686 CG11901 CG8103 CG1276 CG14513 CG11579 CG2262 CG1836 CG15218 CG7892 CG6494 CG3935 CG7035 CG3935 CG11579 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.40Down
Head5 10 of 4 0.40Down
Eye1 10 of 4 0.13Down
Thoracicoabdominal ganglion196 164 of 414.90Up
Salivary gland19 21 of 4 1.48Up
Crop8 10 of 4 0.60Down
Midgut7 00 of 4 0.60Down
Tubule4 00 of 4 0.40Down
Hindgut8 20 of 4 0.70None
Heart35 14 of 4 2.69Up
Fat body71 54 of 4 5.47Up
Ovary1 00 of 4 0.10Down
Testis2 11 of 4 0.20Down
Male accessory glands8 31 of 4 0.70None
Virgin spermatheca159 144 of 412.13Up
Mated spermatheca109 64 of 4 8.32Up
Adult carcass35 34 of 4 2.70Up
Larval CNS92 284 of 4 7.00Up
Larval Salivary gland6 21 of 4 0.46None
Larval midgut3 10 of 4 0.26Down
Larval tubule5 10 of 4 0.40Down
Larval hindgut5 21 of 4 0.38Down
Larval fat body6 20 of 4 0.50None
Larval trachea15 53 of 4 1.18None
Larval carcass38 14 of 4 2.94Up
S2 cells (growing)3 10 of 4 0.29Down
Whole fly13 03 of 4

Looking for FBgn0003944. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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