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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0003961 through 18771 annotations produced 1 hits


Urate oxidase (Uro):

Annotation Number : CG7171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003961
Gbrowse : chr2L:7780084-7781434 (+) // 100.0 //
Probeset : 1625436_at
Accessions : protein= NP_476779;, nucleotide= NM_057431;
Pathway : 0005777 // peroxisome // non-traceable author statement /// 0005777 // peroxisome // inferred from electronic annotation
Interpro : 0004846 // urate oxidase activity // inferred from sequence or structural similarity /// 0004846 // urate oxidase activi
FlyMine data for FBgn0003961.
BioGrid reports that CG7171 interacts with CG9269 CG9036 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland17 ± 51 of 4 0.09Down
Crop6 ± 30 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule6590 ± 5554 of 435.80Up
Hindgut4 ± 00 of 4 0.00Down
Heart13 ± 81 of 4 0.07Down
Fat body40 ± 531 of 4 0.22Down
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands11 ± 32 of 4 0.10Down
Virgin spermatheca14 ± 81 of 4 0.08Down
Mated spermatheca7 ± 10 of 4 0.04Down
Adult carcass6 ± 31 of 4 0.00Down
Larval CNS5 ± 12 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut8 ± 20 of 4 0.04Down
Larval tubule2892 ± 4004 of 415.70Up
Larval hindgut9 ± 12 of 4 0.05Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)13 ± 03 of 4 0.07Down
Whole fly183 ± 434 of 4

Looking for FBgn0003961. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime