FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0003964 through 18771 annotations produced 1 hits

ultraspiracle (usp):

Annotation Number : CG4380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003964
Gbrowse : chrX:1932828-1935316 (-) // 100.0 //
Probeset : 1622981_at
Accessions : protein= NP_476781;, nucleotide= NM_057433;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007298 // border follicle cell migration // inferred from mut
Interpro : heterochronic // traceable author statement /// 0045449 // regulation of transcription // inferred from electronic anno
FlyMine data for FBgn0003964.
Homophila reports that CG4380 is a close match (4e-13) to human gene AR;DHTR;KD;SBMA;SMAX1;TFM (NP_000035), a gene associated with Androgen insensitivity, 300068 (3);Breast cancer, male, with Reifenstein syndrome (3);Hypospadias, perineal, 300633 (3);Prostate cancer (3);Spinal and bulbar muscular atrophy of Kennedy, 313200 (3);{Prostate cancer, susceptibility to}, 176807 (3).
BioGrid reports that CG4380 interacts with CG11502 CG30149 CG3848 .
TRiP has 2 RNAi stocks for FBgn0003964 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	208 ± 2	4 of 4	1.40	Up
Head	111 ± 9	4 of 4	0.80	Down
Eye	63 ± 2	4 of 4	0.44	Down
Thoracicoabdominal ganglion	141 ± 6	4 of 4	1.00	None
Salivary gland	165 ± 7	4 of 4	1.14	None
Crop	121 ± 11	4 of 4	0.80	None
Midgut	105 ± 0	4 of 4	0.70	Down
Tubule	73 ± 4	4 of 4	0.50	Down
Hindgut	124 ± 5	4 of 4	0.90	None
Heart	81 ± 5	4 of 4	0.56	Down
Fat body	117 ± 25	4 of 4	0.81	None
Ovary	341 ± 10	4 of 4	2.30	Up
Testis	18 ± 1	4 of 4	0.10	Down
Male accessory glands	150 ± 2	4 of 4	1.00	None
Virgin spermatheca	114 ± 8	4 of 4	0.78	Down
Mated spermatheca	106 ± 5	4 of 4	0.73	Down
Adult carcass	74 ± 6	4 of 4	0.50	Down
Larval CNS	168 ± 12	4 of 4	1.16	None
Larval Salivary gland	218 ± 11	4 of 4	1.50	Up
Larval midgut	156 ± 11	4 of 4	1.08	None
Larval tubule	119 ± 9	4 of 4	0.80	None
Larval hindgut	167 ± 6	4 of 4	1.15	None
Larval fat body	120 ± 5	4 of 4	0.80	Down
Larval trachea	105 ± 5	4 of 4	0.72	Down
Larval carcass	150 ± 5	4 of 4	1.03	None
S2 cells (growing)	153 ± 4	4 of 4	1.06	None
Whole fly	145 ± 8	4 of 4

Looking for FBgn0003964. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720