Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003979 through 18771 annotations produced 1 hits



Vitelline membrane 26Aa (Vm26Aa):

Annotation Number : CG9048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003979
Gbrowse : chr2L:5959698-5960340 (-) // 100.0 //
Probeset : 1635847_at
Accessions : protein= NP_476783;, nucleotide= NM_057435;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0060388 // vitelline envelope // inferred fro
Interpro : 0008316 // structural constituent of vitelline membrane // non-traceable author statement
FlyMine data for FBgn0003979.
VDRC has 5 RNAi stocks for FBgn0003979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.00Down
Head7 ± 20 of 4 0.00Down
Eye7 ± 30 of 4 0.00Down
Thoracicoabdominal ganglion10 ± 10 of 4 0.00Down
Salivary gland34 ± 150 of 4 0.01Down
Crop8 ± 10 of 4 0.00Down
Midgut19 ± 10 of 4 0.00Down
Tubule24 ± 220 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart6 ± 11 of 4 0.00Down
Fat body27 ± 93 of 4 0.01Down
Ovary3131 ± 1594 of 4 1.00None
Testis4 ± 20 of 4 0.00Down
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca75 ± 264 of 4 0.02Down
Mated spermatheca43 ± 173 of 4 0.01Down
Adult carcass307 ± 1894 of 4 0.10Down
Larval CNS6 ± 30 of 4 0.00Down
Larval Salivary gland8 ± 20 of 4 0.00Down
Larval midgut64 ± 113 of 4 0.02Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.00Down
Larval fat body10 ± 30 of 4 0.00Down
Larval trachea6 ± 60 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly3232 ± 5494 of 4

Looking for FBgn0003979. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime