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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0003996 through 18771 annotations produced 1 hits



white (w):

Annotation Number : CG2759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003996
Gbrowse : chrX:2684631-2690499 (-) // 100.0 //
Probeset : 1624393_at
Accessions : protein= NP_476787;, nucleotide= NM_057439;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004888 // transmembrane receptor activity //
FlyMine data for FBgn0003996.
Homophila reports that CG2759 is a close match (9e-11) to human gene ABCB1;IBD13;MDR1;PGY1 (NP_000918), a gene associated with Colchicine resistance (3);{Inflammatory bowel disease 13, susceptibility to}, 612244 (3).
BioGrid reports that CG2759 interacts with CG9392 CG7490 CG7490 CG8787 CG8787 CG5942 CG17632 CG33553 CG33553 CG33553 CG33553 CG33553 CG33553 CG2711 CG7776 CG14941 CG14941 CG14941 CG14941 CG6474 CG6474 CG6502 CG17743 CG17743 CG17743 CG17743 CG17743 CG17743 CG18740 CG18740 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG32443 CG5109 CG5109 CG5109 CG5109 CG9495 CG9495 CG9495 CG9495 CG9495 CG9495 CG9495 CG9495 CG9495 CG9495 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG6476 CG8409 CG8409 CG8409 CG8651 CG8651 CG8651 CG8651 CG8651 CG10851 CG10851 CG6502 CG6964 CG18783 CG18783 CG3886 CG3886 CG3886 CG3886 CG2161 CG8409 CG3905 CG8887 CG8887 CG10726 CG10986 CG4637 CG15319 CG8764 CG3895 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG18412 CG10072 CG10072 CG8573 CG8573 CG8573 CG8573 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG17170 CG4889 CG3757 CG3757 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG5595 CG5595 CG33261 CG33261 CG33261 CG33261 CG33261 CG33261 Dmel CR32777 CG6779 CG6779 CG9770 CG6779 CG6779 CG6779 CG6779 .
TRiP has 11 RNAi stocks for FBgn0003996 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 0.30Down
Head62 54 of 4 1.60Up
Eye200 34 of 4 5.12Up
Thoracicoabdominal ganglion12 22 of 4 0.30Down
Salivary gland14 30 of 4 0.38Down
Crop81 64 of 4 2.10Up
Midgut11 20 of 4 0.30Down
Tubule1571 1144 of 440.10Up
Hindgut32 54 of 4 0.80None
Heart5 21 of 4 0.14Down
Fat body5 30 of 4 0.13Down
Ovary7 10 of 4 0.20Down
Testis38 34 of 4 1.00None
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca10 20 of 4 0.27Down
Mated spermatheca14 10 of 4 0.36Down
Adult carcass7 20 of 4 0.20Down
Larval CNS8 03 of 4 0.21Down
Larval Salivary gland11 11 of 4 0.30Down
Larval midgut15 20 of 4 0.39Down
Larval tubule2292 944 of 458.60Up
Larval hindgut85 84 of 4 2.19Up
Larval fat body444 454 of 411.40Up
Larval trachea29 74 of 4 0.76None
Larval carcass7 31 of 4 0.18Down
S2 cells (growing)3 00 of 4 0.08Down
Whole fly39 73 of 4

Looking for FBgn0003996. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime