FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004045 through 18771 annotations produced 2 hits

yolk protein 1 (Yp1):

Annotation Number : CG2985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004045
Gbrowse : chrX:9947882-9949849 (+) // 100.0 //
Probeset : 1629545_at
Accessions : protein= NP_511103;, nucleotide= NM_078548;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // traceable
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0004045.
BDGP gene expression has embryonic in situ data for Yp1: 16 pix of staining in 3 body parts.
BioGrid reports that CG2985 interacts with CG32096 CG3918 CG4896 CG5053 CG5064 CG6569 CG6985 CG6996 CG7835 CG9285 .
VDRC has 2 RNAi stocks for FBgn0004045 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2587 ± 70	4 of 4	0.50	Down
Head	5507 ± 259	4 of 4	1.20	None
Eye	8882 ± 402	4 of 4	1.87	Up
Thoracicoabdominal ganglion	3487 ± 223	4 of 4	0.70	Down
Salivary gland	305 ± 114	4 of 4	0.06	Down
Crop	3253 ± 308	4 of 4	0.70	Down
Midgut	71 ± 17	4 of 4	0.00	Down
Tubule	1568 ± 892	2 of 4	0.30	Down
Hindgut	4508 ± 93	4 of 4	1.00	None
Heart	8558 ± 862	4 of 4	1.81	Up
Fat body	4528 ± 929	4 of 4	0.96	None
Ovary	2892 ± 126	4 of 4	0.60	Down
Testis	4 ± 1	0 of 4	0.00	Down
Male accessory glands	13 ± 6	0 of 4	0.00	Down
Virgin spermatheca	4194 ± 245	4 of 4	0.88	None
Mated spermatheca	4633 ± 437	4 of 4	0.98	None
Adult carcass	7667 ± 568	4 of 4	1.60	Up
Larval CNS	7 ± 1	0 of 4	0.00	Down
Larval Salivary gland	10 ± 2	0 of 4	0.00	Down
Larval midgut	51 ± 13	2 of 4	0.01	Down
Larval tubule	3 ± 0	0 of 4	0.00	Down
Larval hindgut	15 ± 4	0 of 4	0.00	Down
Larval fat body	7 ± 2	0 of 4	0.00	Down
Larval trachea	687 ± 1313	1 of 4	0.14	Down
Larval carcass	16 ± 5	0 of 4	0.00	Down
S2 cells (growing)	2 ± 0	0 of 4	0.00	Down
Whole fly	4740 ± 403	4 of 4

/// yolk protein 1 (CG9263 /// Yp1):

Annotation Number : CG9263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032530
Gbrowse : chr2L:13541674-13542576 (-) // 100.0 //
Probeset : 1637392_at
Accessions : protein= NP_609662;, nucleotide= NM_135818;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0032530.
VDRC has 3 RNAi stocks for FBgn0032530 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	2 ± 1	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.00	Down
Salivary gland	8 ± 5	0 of 4	0.07	Down
Crop	3 ± 1	0 of 4	0.00	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	3 ± 0	0 of 4	0.00	Down
Hindgut	1 ± 0	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.01	Down
Fat body	2 ± 2	0 of 4	0.02	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1058 ± 44	4 of 4	8.90	Up
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	3 ± 1	0 of 4	0.03	Down
Adult carcass	5 ± 2	0 of 4	0.00	Down
Larval CNS	2 ± 1	0 of 4	0.02	Down
Larval Salivary gland	5 ± 1	0 of 4	0.05	Down
Larval midgut	1 ± 0	0 of 4	0.01	Down
Larval tubule	4 ± 1	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.01	Down
Larval fat body	101 ± 57	3 of 4	0.90	None
Larval trachea	5 ± 9	1 of 4	0.05	Down
Larval carcass	0 ± 0	0 of 4	0.01	Down
S2 cells (growing)	5 ± 1	0 of 4	0.05	Down
Whole fly	118 ± 5	4 of 4

Looking for FBgn0004045. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720