Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004054 through 18771 annotations produced 1 hits



chr3R:2568853-2569862 (-) // 100.0 // (zerknullt 2):

Annotation Number : CG1048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630133_at
Accessions : protein= , nucleotide= NP_001138017; /// NP_476794;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG1048 is a close match (9e-11) to human gene AI4;DLX3;TDO (NP_005211), a gene associated with Amelogenesis imperfecta, hypomaturation-hypoplastic type, with taurodontism, 104510 (3);Trichodontoosseous syndrome, 190320 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 1.30None
Head5 ± 01 of 4 1.50None
Eye2 ± 00 of 4 0.60None
Thoracicoabdominal ganglion7 ± 04 of 4 2.20Up
Salivary gland14 ± 21 of 4 4.31Up
Crop6 ± 11 of 4 1.90None
Midgut10 ± 03 of 4 3.00Up
Tubule3 ± 00 of 4 1.00None
Hindgut6 ± 01 of 4 1.80None
Heart4 ± 00 of 4 1.34None
Fat body9 ± 31 of 4 2.71Up
Ovary2 ± 00 of 4 0.80None
Testis2 ± 00 of 4 0.70None
Male accessory glands4 ± 20 of 4 1.40None
Virgin spermatheca4 ± 11 of 4 1.25None
Mated spermatheca6 ± 12 of 4 1.78None
Adult carcass9 ± 21 of 4 2.80None
Larval CNS3 ± 11 of 4 1.10None
Larval Salivary gland4 ± 11 of 4 1.37None
Larval midgut8 ± 13 of 4 2.48Up
Larval tubule6 ± 11 of 4 1.80None
Larval hindgut5 ± 12 of 4 1.53None
Larval fat body6 ± 20 of 4 1.80None
Larval trachea3 ± 20 of 4 1.13None
Larval carcass7 ± 01 of 4 2.08Up
S2 cells (growing)3 ± 00 of 4 1.16None
Whole fly3 ± 00 of 4

Looking for FBgn0004054. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime