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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004055 through 18771 annotations produced 1 hits



zipper (uzip):

Annotation Number : CG3533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004055
Gbrowse : chr2R:20899572-20917609 (+) // 100.0 //
Probeset : 1627838_at
Accessions : protein= NP_523861;, nucleotide= NM_079137;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
FlyMine data for FBgn0004055.
BDGP gene expression has embryonic in situ data for uzip: 39 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0004055 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain766 404 of 4 7.70Up
Head429 244 of 4 4.30Up
Eye179 44 of 4 1.80Up
Thoracicoabdominal ganglion834 214 of 4 8.40Up
Salivary gland372 234 of 4 3.74Up
Crop116 54 of 4 1.20None
Midgut17 24 of 4 0.20Down
Tubule10 13 of 4 0.10Down
Hindgut62 14 of 4 0.60Down
Heart18 24 of 4 0.19Down
Fat body48 84 of 4 0.49Down
Ovary68 34 of 4 0.70Down
Testis86 64 of 4 0.90None
Male accessory glands14 23 of 4 0.10Down
Virgin spermatheca56 44 of 4 0.57Down
Mated spermatheca64 54 of 4 0.65Down
Adult carcass95 54 of 4 1.00None
Larval CNS510 444 of 4 5.13Up
Larval Salivary gland40 64 of 4 0.40Down
Larval midgut23 14 of 4 0.23Down
Larval tubule6 13 of 4 0.10Down
Larval hindgut423 124 of 4 4.25Up
Larval fat body12 14 of 4 0.10Down
Larval trachea156 214 of 4 1.57Up
Larval carcass197 154 of 4 1.98Up
S2 cells (growing)103 14 of 4 1.04None
Whole fly99 84 of 4

Looking for FBgn0004055. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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