FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004101 through 18771 annotations produced 1 hits

chr2R:20231235-20263998 (+) // 100.0 // (pruned):

Annotation Number : CG3411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630990_at
Accessions : protein= , nucleotide= NP_001137751; /// NP_726438;
Pathway : "0002168 // instar larval development // inferred from mutant phenotype /// 0006350 // transcription // inferred from el
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
BioGrid reports that CG3411 interacts with CG3954 CG3619 CG1007 CG1007 CG5460 CG9623 CG9623 CG4444 CG4444 CG9375 CG12559 CG12559 CG10079 CG10491 CG14228 CG14228 CG3936 CG3936 CG1771 CG1560 CG1560 CG1560 CG1560 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	114 ± 1	4 of 4	0.90	None
Head	67 ± 3	4 of 4	0.50	Down
Eye	58 ± 3	4 of 4	0.45	Down
Thoracicoabdominal ganglion	102 ± 2	4 of 4	0.80	None
Salivary gland	100 ± 2	4 of 4	0.77	Down
Crop	71 ± 2	4 of 4	0.60	Down
Midgut	107 ± 3	4 of 4	0.80	None
Tubule	34 ± 1	3 of 4	0.30	Down
Hindgut	54 ± 2	4 of 4	0.40	Down
Heart	65 ± 2	4 of 4	0.50	Down
Fat body	92 ± 6	4 of 4	0.71	Down
Ovary	301 ± 3	4 of 4	2.30	Up
Testis	30 ± 1	4 of 4	0.20	Down
Male accessory glands	74 ± 4	2 of 4	0.60	Down
Virgin spermatheca	55 ± 1	0 of 4	0.42	Down
Mated spermatheca	63 ± 4	0 of 4	0.49	Down
Adult carcass	78 ± 3	3 of 4	0.60	Down
Larval CNS	169 ± 10	4 of 4	1.31	Up
Larval Salivary gland	163 ± 6	4 of 4	1.26	Up
Larval midgut	102 ± 3	4 of 4	0.79	None
Larval tubule	108 ± 5	4 of 4	0.80	None
Larval hindgut	76 ± 1	4 of 4	0.59	Down
Larval fat body	100 ± 5	4 of 4	0.80	Down
Larval trachea	67 ± 9	4 of 4	0.52	Down
Larval carcass	118 ± 4	4 of 4	0.91	None
S2 cells (growing)	133 ± 3	4 of 4	1.03	None
Whole fly	129 ± 9	4 of 4

Looking for FBgn0004101. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720