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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004103 through 18771 annotations produced 1 hits



Protein phosphatase 1 (Pp1-87B):

Annotation Number : CG5650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004103
Gbrowse : chr3R:8249334-8251639 (-) // 100.0 //
Probeset : 1624023_at
Accessions : protein= NP_524937;, nucleotide= NM_080198;
Pathway : engulfment // inferred from mutant phenotype /// 0007059 // chromosome segregation // inferred from mutant phenotype //
Interpro : 0000164 // protein phosphatase type 1 complex // inferred from sequence or structural similarity /// 0005737 // cytoplas
FlyMine data for FBgn0004103.
BioGrid reports that CG5650 interacts with CG6477 CG8316 CG9238 CG9933 CG7285 CG8980 CG9170 CG6502 CG6502 CG11420 CG7904 CG7904 CG10574 CG8980 CG10718 CG10718 .
TRiP has 1 RNAi stocks for FBgn0004103 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004103 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1121 ± 154 of 4 1.70Up
Head969 ± 164 of 4 1.50Up
Eye1382 ± 914 of 4 2.15Up
Thoracicoabdominal ganglion931 ± 174 of 4 1.40Up
Salivary gland1212 ± 164 of 4 1.89Up
Crop1017 ± 134 of 4 1.60Up
Midgut903 ± 74 of 4 1.40Up
Tubule989 ± 84 of 4 1.50Up
Hindgut937 ± 114 of 4 1.50Up
Heart688 ± 184 of 4 1.07None
Fat body658 ± 304 of 4 1.02None
Ovary733 ± 34 of 4 1.10Up
Testis286 ± 74 of 4 0.40Down
Male accessory glands1015 ± 124 of 4 1.60Up
Virgin spermatheca839 ± 254 of 4 1.31Up
Mated spermatheca784 ± 234 of 4 1.22Up
Adult carcass802 ± 384 of 4 1.20Up
Larval CNS1400 ± 504 of 4 2.18Up
Larval Salivary gland1107 ± 74 of 4 1.72Up
Larval midgut974 ± 304 of 4 1.52Up
Larval tubule948 ± 184 of 4 1.50Up
Larval hindgut834 ± 74 of 4 1.30Up
Larval fat body961 ± 1044 of 4 1.50None
Larval trachea956 ± 354 of 4 1.49Up
Larval carcass1011 ± 194 of 4 1.57Up
S2 cells (growing)1177 ± 284 of 4 1.83Up
Whole fly643 ± 64 of 4

Looking for FBgn0004103. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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