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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004108 through 18771 annotations produced 1 hits

disabled (Nrt):

Annotation Number : CG9704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004108
Gbrowse : chr3L:16759173-16770678 (+) // 100.0 //
Probeset : 1623966_s_at
Accessions : protein= NP_476798; /// NP_730196;, nucleotide= NM_057450; /// NM_168682;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
FlyMine data for FBgn0004108.
BDGP gene expression has embryonic in situ data for Nrt: 15 pix of staining in 19 body parts.
Homophila reports that CG9704 is a close match (9e-12) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG9704 interacts with CG1634 CG3936 CG3936 CG16973 .
TRiP has 1 RNAi stocks for FBgn0004108 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004108 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 124 of 4 5.40Up
Head50 44 of 4 2.10Up
Eye37 24 of 4 1.55Up
Thoracicoabdominal ganglion86 44 of 4 3.60Up
Salivary gland5 11 of 4 0.21Down
Crop7 02 of 4 0.30Down
Midgut10 14 of 4 0.40Down
Tubule5 01 of 4 0.20Down
Hindgut9 14 of 4 0.40Down
Heart12 24 of 4 0.53None
Fat body20 44 of 4 0.85None
Ovary25 14 of 4 1.10None
Testis8 13 of 4 0.30Down
Male accessory glands25 34 of 4 1.10None
Virgin spermatheca5 12 of 4 0.21Down
Mated spermatheca5 02 of 4 0.24Down
Adult carcass11 22 of 4 0.50Down
Larval CNS735 1874 of 430.27Up
Larval Salivary gland3 10 of 4 0.15Down
Larval midgut4 00 of 4 0.19Down
Larval tubule2 01 of 4 0.10Down
Larval hindgut3 02 of 4 0.14Down
Larval fat body12 04 of 4 0.50None
Larval trachea7 24 of 4 0.30Down
Larval carcass6 04 of 4 0.27Down
S2 cells (growing)4 02 of 4 0.18Down
Whole fly24 44 of 4

Looking for FBgn0004108. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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