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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004110 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:17204700-17207692 (+) // 100.0 //):

Annotation Number : CG7895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1637278_at
Accessions : protein= , nucleotide=
Interpro : "0001708 // cell fate specification // non-traceable author statement /// 0006355 // regulation of transcription
Homophila reports that CG7895 is a close match (2e-11) to human gene HOX7;HYD1;MSX1;OFC5 (NP_002439), a gene associated with Cleft lip/palate, nonsyndromic, 608874 (3);Hypodontia with orofacial cleft, 106600 (3);Hypodontia, autosomal dominant, 106600 (3);Witkop syndrome, 189500 (3).
BioGrid reports that CG7895 interacts with CG1322 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.50None
Head4 10 of 4 0.50None
Eye2 00 of 4 0.37None
Thoracicoabdominal ganglion4 00 of 4 0.50None
Salivary gland9 50 of 4 1.25None
Crop2 00 of 4 0.30None
Midgut2 10 of 4 0.30None
Tubule8 10 of 4 1.10None
Hindgut6 00 of 4 0.80None
Heart40 24 of 4 5.10Up
Fat body4 30 of 4 0.56None
Ovary1 00 of 4 0.20None
Testis3 00 of 4 0.40None
Male accessory glands5 20 of 4 0.70None
Virgin spermatheca6 10 of 4 0.85None
Mated spermatheca4 10 of 4 0.56None
Adult carcass11 50 of 4 1.40None
Larval CNS3 10 of 4 0.49None
Larval Salivary gland1 00 of 4 0.17None
Larval midgut2 00 of 4 0.35None
Larval tubule4 10 of 4 0.60None
Larval hindgut2 00 of 4 0.31None
Larval fat body6 40 of 4 0.80None
Larval trachea4 50 of 4 0.62None
Larval carcass3 10 of 4 0.45None
S2 cells (growing)4 10 of 4 0.53None
Whole fly7 21 of 4

Looking for FBgn0004110. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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