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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004143 through 18771 annotations produced 1 hits



chrX:6943453-6944417 (+) // 100.0 // (nullo):

Annotation Number : CG14426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630890_at
Accessions : protein= , nucleotide= NP_511067;
Pathway : "0000910 // cytokinesis // traceable author statement /// 0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0007043 // cell-cell junction assembly // in
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.80None
Head4 ± 20 of 4 1.10None
Eye3 ± 00 of 4 0.90None
Thoracicoabdominal ganglion5 ± 21 of 4 1.20None
Salivary gland17 ± 31 of 4 4.01Up
Crop10 ± 13 of 4 2.30Up
Midgut8 ± 12 of 4 2.00Up
Tubule7 ± 11 of 4 1.80Up
Hindgut6 ± 01 of 4 1.50None
Heart3 ± 01 of 4 0.89None
Fat body12 ± 72 of 4 2.80None
Ovary4 ± 11 of 4 0.90None
Testis4 ± 00 of 4 1.10None
Male accessory glands2 ± 00 of 4 0.60None
Virgin spermatheca12 ± 14 of 4 3.00Up
Mated spermatheca9 ± 42 of 4 2.16None
Adult carcass11 ± 10 of 4 2.60Up
Larval CNS8 ± 14 of 4 1.92Up
Larval Salivary gland5 ± 10 of 4 1.16None
Larval midgut7 ± 12 of 4 1.66None
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut5 ± 02 of 4 1.27None
Larval fat body7 ± 21 of 4 1.70None
Larval trachea2 ± 10 of 4 0.65None
Larval carcass4 ± 00 of 4 1.02None
S2 cells (growing)4 ± 10 of 4 1.08None
Whole fly4 ± 01 of 4

Looking for FBgn0004143. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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