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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004167 through 18771 annotations produced 1 hits



betaH-Spectrin (kst):

Annotation Number : CG12008
Flybase ID : FBgn0004167
Gbrowse : chr3L:3351526-3368136 (+) // 100.0 //
Probeset : 1637710_at
Accessions : protein= NP_001097492; /// NP_523900; /// NP_995987; /// NP_995988;, nucleotide= NM_001104022; /// NM_079176; /// NM_206265; /// NM_206266;
Pathway : 0008091 // spectrin // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred
Interpro : 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from sequence or structu
FlyMine data for FBgn0004167.
BDGP gene expression has embryonic in situ data for kst: 14 pix of staining in 7 body parts.
Homophila reports that CG12008 is a close match (5e-11) to human gene EHBP1;HPC12;KIAA0903 (NP_056067), a gene associated with {Prostate cancer, hereditary, 12}, 611868 (3).
BioGrid reports that CG12008 interacts with CG6383 .
TRiP has 1 RNAi stocks for FBgn0004167 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 04 of 4 0.20Down
Head112 124 of 4 1.10None
Eye275 274 of 4 2.70Up
Thoracicoabdominal ganglion20 13 of 4 0.20Down
Salivary gland250 244 of 4 2.46Up
Crop214 94 of 4 2.10Up
Midgut719 214 of 4 7.10Up
Tubule214 34 of 4 2.10Up
Hindgut357 74 of 4 3.50Up
Heart186 54 of 4 1.83Up
Fat body239 564 of 4 2.35Up
Ovary64 24 of 4 0.60Down
Testis14 13 of 4 0.10Down
Male accessory glands121 34 of 4 1.20None
Virgin spermatheca179 64 of 4 1.76Up
Mated spermatheca200 64 of 4 1.96Up
Adult carcass162 174 of 4 1.60Up
Larval CNS68 84 of 4 0.67Down
Larval Salivary gland175 114 of 4 1.72Up
Larval midgut407 504 of 4 4.00Up
Larval tubule387 64 of 4 3.80Up
Larval hindgut368 74 of 4 3.62Up
Larval fat body38 34 of 4 0.40Down
Larval trachea564 394 of 4 5.54Up
Larval carcass163 114 of 4 1.61Up
S2 cells (growing)616 274 of 4 6.05Up
Whole fly101 104 of 4

Looking for FBgn0004167. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime