FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004167 through 18771 annotations produced 1 hits

betaH-Spectrin (kst):

Annotation Number : CG12008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004167
Gbrowse : chr3L:3351526-3368136 (+) // 100.0 //
Probeset : 1637710_at
Accessions : protein= NP_001097492; /// NP_523900; /// NP_995987; /// NP_995988;, nucleotide= NM_001104022; /// NM_079176; /// NM_206265; /// NM_206266;
Pathway : 0008091 // spectrin // inferred from sequence or structural similarity /// 0016324 // apical plasma membrane // inferred
Interpro : 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from sequence or structu
FlyMine data for FBgn0004167.
BDGP gene expression has embryonic in situ data for kst: 14 pix of staining in 7 body parts.
Homophila reports that CG12008 is a close match (5e-11) to human gene EHBP1;HPC12;KIAA0903 (NP_056067), a gene associated with {Prostate cancer, hereditary, 12}, 611868 (3).
BioGrid reports that CG12008 interacts with CG6383 .
TRiP has 1 RNAi stocks for FBgn0004167 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004167 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	22 ± 0	4 of 4	0.20	Down
Head	112 ± 12	4 of 4	1.10	None
Eye	275 ± 27	4 of 4	2.70	Up
Thoracicoabdominal ganglion	20 ± 1	3 of 4	0.20	Down
Salivary gland	250 ± 24	4 of 4	2.46	Up
Crop	214 ± 9	4 of 4	2.10	Up
Midgut	719 ± 21	4 of 4	7.10	Up
Tubule	214 ± 3	4 of 4	2.10	Up
Hindgut	357 ± 7	4 of 4	3.50	Up
Heart	186 ± 5	4 of 4	1.83	Up
Fat body	239 ± 56	4 of 4	2.35	Up
Ovary	64 ± 2	4 of 4	0.60	Down
Testis	14 ± 1	3 of 4	0.10	Down
Male accessory glands	121 ± 3	4 of 4	1.20	None
Virgin spermatheca	179 ± 6	4 of 4	1.76	Up
Mated spermatheca	200 ± 6	4 of 4	1.96	Up
Adult carcass	162 ± 17	4 of 4	1.60	Up
Larval CNS	68 ± 8	4 of 4	0.67	Down
Larval Salivary gland	175 ± 11	4 of 4	1.72	Up
Larval midgut	407 ± 50	4 of 4	4.00	Up
Larval tubule	387 ± 6	4 of 4	3.80	Up
Larval hindgut	368 ± 7	4 of 4	3.62	Up
Larval fat body	38 ± 3	4 of 4	0.40	Down
Larval trachea	564 ± 39	4 of 4	5.54	Up
Larval carcass	163 ± 11	4 of 4	1.61	Up
S2 cells (growing)	616 ± 27	4 of 4	6.05	Up
Whole fly	101 ± 10	4 of 4

Looking for FBgn0004167. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720