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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004170 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chrX:290092-291514 (+) // 100.0 //):

Annotation Number : CG3827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr1-0.0
Gbrowse :
Probeset : 1625273_at
Accessions : protein= , nucleotide=
Interpro : "0006355 // regulation of transcription
FlyMine data for chr1-0.0.
BioGrid reports that CG3827 interacts with CG6474 CG6494 CG6494 CG32120 CG8361 CG8328 CG8333 CG32491 CG32491 CG32491 CG32491 CG32491 CG32491 CG1641 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG4889 CG7803 CG7508 CG8704 CG6494 CG1856 Dmel CG18350 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head2 ± 10 of 4 0.40None
Eye4 ± 11 of 4 0.71None
Thoracicoabdominal ganglion4 ± 00 of 4 0.80None
Salivary gland5 ± 10 of 4 0.84None
Crop6 ± 00 of 4 1.00None
Midgut12 ± 11 of 4 2.00Up
Tubule3 ± 00 of 4 0.60Down
Hindgut6 ± 10 of 4 1.00None
Heart4 ± 10 of 4 0.74None
Fat body8 ± 20 of 4 1.34None
Ovary3 ± 10 of 4 0.60None
Testis1 ± 00 of 4 0.30Down
Male accessory glands6 ± 30 of 4 1.00None
Virgin spermatheca5 ± 20 of 4 0.84None
Mated spermatheca3 ± 20 of 4 0.61None
Adult carcass3 ± 10 of 4 0.60None
Larval CNS30 ± 24 of 4 4.95Up
Larval Salivary gland8 ± 10 of 4 1.30None
Larval midgut4 ± 20 of 4 0.76None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut8 ± 23 of 4 1.41None
Larval fat body4 ± 20 of 4 0.70None
Larval trachea15 ± 14 of 4 2.54Up
Larval carcass12 ± 22 of 4 2.03None
S2 cells (growing)1 ± 00 of 4 0.16Down
Whole fly6 ± 00 of 4

Looking for FBgn0004170. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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