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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004174 through 18771 annotations produced 1 hits



Male-specific RNA 84Dc (Mst84Dc):

Annotation Number : CG17945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004174
Gbrowse : chr3R:3189974-3190396 (-) // 100.0 //
Probeset : 1629240_at
Accessions : protein= NP_001097701; /// NP_524254;, nucleotide= NM_001104231; /// NM_079530;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding /
FlyMine data for FBgn0004174.
BioGrid reports that CG17945 interacts with CG2098 CG2851 CG3187 CG32183 CG3642 CG14578 CG40127 CG4046 CG5118 CG6416 CG6534 CG6619 CG7961 CG8057 CG8268 CG9821 CG9908 .
VDRC has 4 RNAi stocks for FBgn0004174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 04 of 4 0.00Down
Head11 ± 42 of 4 0.00Down
Eye11 ± 04 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 12 of 4 0.00Down
Salivary gland43 ± 83 of 4 0.04Down
Crop12 ± 13 of 4 0.00Down
Midgut6 ± 11 of 4 0.00Down
Tubule16 ± 33 of 4 0.00Down
Hindgut11 ± 14 of 4 0.00Down
Heart15 ± 13 of 4 0.02Down
Fat body22 ± 44 of 4 0.02Down
Ovary7 ± 03 of 4 0.00Down
Testis3133 ± 754 of 4 3.10Up
Male accessory glands19 ± 62 of 4 0.00Down
Virgin spermatheca12 ± 03 of 4 0.01Down
Mated spermatheca37 ± 104 of 4 0.04Down
Adult carcass48 ± 114 of 4 0.00Down
Larval CNS6 ± 12 of 4 0.01Down
Larval Salivary gland17 ± 14 of 4 0.02Down
Larval midgut15 ± 22 of 4 0.02Down
Larval tubule10 ± 13 of 4 0.00Down
Larval hindgut10 ± 04 of 4 0.01Down
Larval fat body509 ± 2394 of 4 0.50None
Larval trachea60 ± 794 of 4 0.06Down
Larval carcass15 ± 24 of 4 0.02Down
S2 cells (growing)8 ± 03 of 4 0.01Down
Whole fly1009 ± 194 of 4

Looking for FBgn0004174. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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