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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004179 through 18771 annotations produced 1 hits



cysteine string protein (Csp):

Annotation Number : CG6395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004179
Gbrowse : chr3L:22260360-22266846 (+) // 100.0 //
Probeset : 1636651_a_at
Accessions : protein= NP_524213; /// NP_730713; /// NP_730714;, nucleotide= NM_079489; /// NM_168949; /// NM_168950;
Pathway : 0005624 // membrane fraction // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0004179.
BioGrid reports that CG6395 interacts with CG4264 CG31136 CG4264 .
TRiP has 3 RNAi stocks for FBgn0004179 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1093 304 of 4 3.80Up
Head588 314 of 4 2.00Up
Eye905 144 of 4 3.13Up
Thoracicoabdominal ganglion1385 54 of 4 4.80Up
Salivary gland707 244 of 4 2.45Up
Crop444 134 of 4 1.50Up
Midgut571 94 of 4 2.00Up
Tubule911 294 of 4 3.20Up
Hindgut456 94 of 4 1.60Up
Heart214 74 of 4 0.74Down
Fat body305 304 of 4 1.06None
Ovary417 84 of 4 1.40Up
Testis102 14 of 4 0.40Down
Male accessory glands772 184 of 4 2.70Up
Virgin spermatheca698 394 of 4 2.42Up
Mated spermatheca993 224 of 4 3.44Up
Adult carcass189 124 of 4 0.70Down
Larval CNS1134 1104 of 4 3.92Up
Larval Salivary gland810 254 of 4 2.80Up
Larval midgut926 614 of 4 3.20Up
Larval tubule553 204 of 4 1.90Up
Larval hindgut736 144 of 4 2.55Up
Larval fat body239 144 of 4 0.80None
Larval trachea493 94 of 4 1.71Up
Larval carcass476 114 of 4 1.65Up
S2 cells (growing)466 194 of 4 1.61Up
Whole fly289 144 of 4

Looking for FBgn0004179. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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