FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004198 through 18771 annotations produced 2 hits

cut (ct):

Annotation Number : CG11387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004198
Gbrowse : chrX:7526258-7542187 (+) // 99.57 //
Probeset : 1625385_at
Accessions : protein= NP_001138174; /// NP_524764; /// NP_727194;, nucleotide= NM_001144702; /// NM_080025; /// NM_167130;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : open tracheal system // inferred from mutant phenotype /// 0045165 // cell fate commitment // non-traceable author stat
FlyMine data for FBgn0004198.
BDGP gene expression has embryonic in situ data for ct: 50 pix of staining in 18 body parts.
BioGrid reports that CG11387 interacts with CG1520 CG3399 CG4379 CG15191 CG6502 CG8118 CG8118 CG32491 CG32491 CG32491 CG32491 CG12743 CG9495 CG3722 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG7803 CG7803 CG3924 CG3936 CG17704 CG3886 CG3905 CG1903 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG32217 Dmel CR31863 CG18001 .
TRiP has 2 RNAi stocks for FBgn0004198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004198 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	163 ± 9	4 of 4	20.50	Up
Head	15 ± 1	4 of 4	2.00	Up
Eye	38 ± 2	4 of 4	4.80	Up
Thoracicoabdominal ganglion	113 ± 6	4 of 4	14.30	Up
Salivary gland	14 ± 3	0 of 4	1.81	None
Crop	7 ± 3	1 of 4	0.90	None
Midgut	2 ± 0	0 of 4	0.30	Down
Tubule	133 ± 16	4 of 4	16.80	Up
Hindgut	11 ± 1	4 of 4	1.50	None
Heart	13 ± 1	4 of 4	1.67	None
Fat body	24 ± 9	4 of 4	3.03	Up
Ovary	9 ± 0	4 of 4	1.20	None
Testis	2 ± 0	0 of 4	0.30	Down
Male accessory glands	12 ± 2	0 of 4	1.60	None
Virgin spermatheca	28 ± 3	4 of 4	3.54	Up
Mated spermatheca	32 ± 8	3 of 4	4.13	Up
Adult carcass	17 ± 4	2 of 4	2.20	None
Larval CNS	116 ± 26	4 of 4	14.71	Up
Larval Salivary gland	77 ± 2	4 of 4	9.69	Up
Larval midgut	1 ± 0	0 of 4	0.18	Down
Larval tubule	222 ± 11	4 of 4	28.00	Up
Larval hindgut	8 ± 1	2 of 4	1.05	None
Larval fat body	8 ± 2	0 of 4	1.00	None
Larval trachea	57 ± 8	4 of 4	7.29	Up
Larval carcass	27 ± 2	4 of 4	3.50	Up
S2 cells (growing)	29 ± 1	4 of 4	3.77	Up
Whole fly	8 ± 1	3 of 4

cut (ct):

Annotation Number : HDC17859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004198
Gbrowse : chrX:7526791-7527577 (+) // 95.4 //
Probeset : 1637687_at
Accessions : protein= NP_001138174; /// NP_524764; /// NP_727194;, nucleotide= NM_001144702; /// NM_080025; /// NM_167130;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : open tracheal system // inferred from mutant phenotype /// 0045165 // cell fate commitment // non-traceable author stat
FlyMine data for FBgn0004198.
BDGP gene expression has embryonic in situ data for ct: 50 pix of staining in 18 body parts.
TRiP has 2 RNAi stocks for FBgn0004198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004198 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	109 ± 7	4 of 4	16.20	Up
Head	12 ± 1	4 of 4	1.90	Up
Eye	32 ± 2	4 of 4	4.85	Up
Thoracicoabdominal ganglion	88 ± 6	4 of 4	13.00	Up
Salivary gland	26 ± 1	2 of 4	3.97	Up
Crop	12 ± 1	3 of 4	1.90	Up
Midgut	5 ± 0	1 of 4	0.80	None
Tubule	191 ± 23	4 of 4	28.20	Up
Hindgut	9 ± 1	4 of 4	1.40	None
Heart	11 ± 1	2 of 4	1.68	None
Fat body	20 ± 8	4 of 4	3.01	Up
Ovary	8 ± 1	4 of 4	1.20	None
Testis	3 ± 0	0 of 4	0.50	Down
Male accessory glands	4 ± 0	0 of 4	0.70	None
Virgin spermatheca	32 ± 6	4 of 4	4.78	Up
Mated spermatheca	47 ± 11	4 of 4	6.97	Up
Adult carcass	13 ± 4	3 of 4	2.00	None
Larval CNS	100 ± 13	4 of 4	14.83	Up
Larval Salivary gland	82 ± 10	4 of 4	12.17	Up
Larval midgut	3 ± 1	0 of 4	0.51	Down
Larval tubule	184 ± 19	4 of 4	27.20	Up
Larval hindgut	6 ± 1	3 of 4	0.93	None
Larval fat body	10 ± 4	0 of 4	1.60	None
Larval trachea	67 ± 5	4 of 4	10.00	Up
Larval carcass	34 ± 3	4 of 4	5.11	Up
S2 cells (growing)	107 ± 5	4 of 4	15.94	Up
Whole fly	6 ± 0	3 of 4

Looking for FBgn0004198. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720