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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004198 through 18771 annotations produced 2 hits



cut (ct):

Annotation Number : HDC17859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004198
Gbrowse : chrX:7526791-7527577 (+) // 95.4 //
Probeset : 1637687_at
Accessions : protein= NP_001138174; /// NP_524764; /// NP_727194;, nucleotide= NM_001144702; /// NM_080025; /// NM_167130;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : open tracheal system // inferred from mutant phenotype /// 0045165 // cell fate commitment // non-traceable author stat
FlyMine data for FBgn0004198.
BDGP gene expression has embryonic in situ data for ct: 50 pix of staining in 18 body parts.
TRiP has 2 RNAi stocks for FBgn0004198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 74 of 416.20Up
Head12 14 of 4 1.90Up
Eye32 24 of 4 4.85Up
Thoracicoabdominal ganglion88 64 of 413.00Up
Salivary gland26 12 of 4 3.97Up
Crop12 13 of 4 1.90Up
Midgut5 01 of 4 0.80None
Tubule191 234 of 428.20Up
Hindgut9 14 of 4 1.40None
Heart11 12 of 4 1.68None
Fat body20 84 of 4 3.01Up
Ovary8 14 of 4 1.20None
Testis3 00 of 4 0.50Down
Male accessory glands4 00 of 4 0.70None
Virgin spermatheca32 64 of 4 4.78Up
Mated spermatheca47 114 of 4 6.97Up
Adult carcass13 43 of 4 2.00None
Larval CNS100 134 of 414.83Up
Larval Salivary gland82 104 of 412.17Up
Larval midgut3 10 of 4 0.51Down
Larval tubule184 194 of 427.20Up
Larval hindgut6 13 of 4 0.93None
Larval fat body10 40 of 4 1.60None
Larval trachea67 54 of 410.00Up
Larval carcass34 34 of 4 5.11Up
S2 cells (growing)107 54 of 415.94Up
Whole fly6 03 of 4



cut (ct):

Annotation Number : CG11387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004198
Gbrowse : chrX:7526258-7542187 (+) // 99.57 //
Probeset : 1625385_at
Accessions : protein= NP_001138174; /// NP_524764; /// NP_727194;, nucleotide= NM_001144702; /// NM_080025; /// NM_167130;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : open tracheal system // inferred from mutant phenotype /// 0045165 // cell fate commitment // non-traceable author stat
FlyMine data for FBgn0004198.
BDGP gene expression has embryonic in situ data for ct: 50 pix of staining in 18 body parts.
BioGrid reports that CG11387 interacts with CG1520 CG3399 CG4379 CG15191 CG6502 CG8118 CG8118 CG32491 CG32491 CG32491 CG32491 CG12743 CG9495 CG3722 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG7803 CG7803 CG3924 CG3936 CG17704 CG3886 CG3905 CG1903 CG8573 CG8573 CG8573 CG8573 CG8573 CG8573 CG32217 Dmel CR31863 CG18001 .
TRiP has 2 RNAi stocks for FBgn0004198 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain163 94 of 420.50Up
Head15 14 of 4 2.00Up
Eye38 24 of 4 4.80Up
Thoracicoabdominal ganglion113 64 of 414.30Up
Salivary gland14 30 of 4 1.81None
Crop7 31 of 4 0.90None
Midgut2 00 of 4 0.30Down
Tubule133 164 of 416.80Up
Hindgut11 14 of 4 1.50None
Heart13 14 of 4 1.67None
Fat body24 94 of 4 3.03Up
Ovary9 04 of 4 1.20None
Testis2 00 of 4 0.30Down
Male accessory glands12 20 of 4 1.60None
Virgin spermatheca28 34 of 4 3.54Up
Mated spermatheca32 83 of 4 4.13Up
Adult carcass17 42 of 4 2.20None
Larval CNS116 264 of 414.71Up
Larval Salivary gland77 24 of 4 9.69Up
Larval midgut1 00 of 4 0.18Down
Larval tubule222 114 of 428.00Up
Larval hindgut8 12 of 4 1.05None
Larval fat body8 20 of 4 1.00None
Larval trachea57 84 of 4 7.29Up
Larval carcass27 24 of 4 3.50Up
S2 cells (growing)29 14 of 4 3.77Up
Whole fly8 13 of 4

Looking for FBgn0004198. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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