Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004227 through 18771 annotations produced 3 hits



chrX:16255565-16265580 (+) // 100.0 // (no-on-transient A):

Annotation Number : CG4211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638824_a_at
Accessions : protein= , nucleotide= NP_001014747; /// NP_523367; /// NP_727962;
Pathway : "0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for full length.
BioGrid reports that CG4211 interacts with CG6569 CG7238 CG9071 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 ± 54 of 4 3.50Up
Head114 ± 24 of 4 1.50Up
Eye110 ± 104 of 4 1.43Up
Thoracicoabdominal ganglion225 ± 114 of 4 2.90Up
Salivary gland60 ± 24 of 4 0.78Down
Crop101 ± 54 of 4 1.30Up
Midgut51 ± 34 of 4 0.70Down
Tubule95 ± 24 of 4 1.20Up
Hindgut89 ± 24 of 4 1.10Up
Heart54 ± 24 of 4 0.71Down
Fat body61 ± 94 of 4 0.80Down
Ovary140 ± 44 of 4 1.80Up
Testis34 ± 24 of 4 0.40Down
Male accessory glands82 ± 24 of 4 1.10None
Virgin spermatheca53 ± 14 of 4 0.69Down
Mated spermatheca53 ± 44 of 4 0.69Down
Adult carcass69 ± 34 of 4 0.90None
Larval CNS342 ± 94 of 4 4.42Up
Larval Salivary gland113 ± 34 of 4 1.46Up
Larval midgut44 ± 34 of 4 0.57Down
Larval tubule164 ± 54 of 4 2.10Up
Larval hindgut97 ± 24 of 4 1.25Up
Larval fat body157 ± 74 of 4 2.00Up
Larval trachea104 ± 34 of 4 1.35Up
Larval carcass114 ± 94 of 4 1.47Up
S2 cells (growing)192 ± 64 of 4 2.48Up
Whole fly77 ± 24 of 4



chrX:16255565-16262561 (+) // 100.0 // (no-on-transient A):

Annotation Number : CG4211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635518_at
Accessions : protein= , nucleotide= NP_001014747; /// NP_523367; /// NP_727962;
Pathway : "0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for full length.
BioGrid reports that CG4211 interacts with CG6569 CG7238 CG9071 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain282 ± 154 of 410.80Up
Head102 ± 144 of 4 3.90Up
Eye31 ± 54 of 4 1.20None
Thoracicoabdominal ganglion196 ± 54 of 4 7.50Up
Salivary gland29 ± 44 of 4 1.12None
Crop47 ± 34 of 4 1.80Up
Midgut23 ± 24 of 4 0.90None
Tubule27 ± 34 of 4 1.00None
Hindgut44 ± 34 of 4 1.70Up
Heart13 ± 14 of 4 0.52Down
Fat body30 ± 54 of 4 1.17None
Ovary20 ± 04 of 4 0.80None
Testis4 ± 11 of 4 0.20Down
Male accessory glands26 ± 24 of 4 1.00None
Virgin spermatheca38 ± 34 of 4 1.46Up
Mated spermatheca39 ± 54 of 4 1.50None
Adult carcass30 ± 64 of 4 1.20None
Larval CNS344 ± 604 of 413.19Up
Larval Salivary gland62 ± 54 of 4 2.39Up
Larval midgut43 ± 44 of 4 1.67Up
Larval tubule88 ± 64 of 4 3.40Up
Larval hindgut66 ± 44 of 4 2.55Up
Larval fat body82 ± 64 of 4 3.20Up
Larval trachea24 ± 44 of 4 0.93None
Larval carcass94 ± 04 of 4 3.60Up
S2 cells (growing)81 ± 84 of 4 3.13Up
Whole fly26 ± 24 of 4



chrX:16255565-16265580 (+) // 100.0 // (no-on-transient A):

Annotation Number : CG4211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625340_at
Accessions : protein= , nucleotide= NP_001014747; /// NP_523367; /// NP_727962;
Pathway : "0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for full length.
BioGrid reports that CG4211 interacts with CG6569 CG7238 CG9071 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain863 ± 344 of 4 8.80Up
Head209 ± 214 of 4 2.10Up
Eye349 ± 174 of 4 3.54Up
Thoracicoabdominal ganglion839 ± 494 of 4 8.50Up
Salivary gland177 ± 154 of 4 1.79Up
Crop249 ± 54 of 4 2.50Up
Midgut140 ± 74 of 4 1.40Up
Tubule195 ± 144 of 4 2.00Up
Hindgut186 ± 74 of 4 1.90Up
Heart168 ± 94 of 4 1.71Up
Fat body118 ± 134 of 4 1.20None
Ovary83 ± 64 of 4 0.80None
Testis31 ± 24 of 4 0.30Down
Male accessory glands303 ± 34 of 4 3.10Up
Virgin spermatheca284 ± 94 of 4 2.88Up
Mated spermatheca273 ± 104 of 4 2.77Up
Adult carcass131 ± 104 of 4 1.30None
Larval CNS429 ± 404 of 4 4.36Up
Larval Salivary gland111 ± 54 of 4 1.13None
Larval midgut105 ± 94 of 4 1.07None
Larval tubule228 ± 104 of 4 2.30Up
Larval hindgut118 ± 74 of 4 1.20None
Larval fat body293 ± 274 of 4 3.00Up
Larval trachea278 ± 254 of 4 2.82Up
Larval carcass228 ± 214 of 4 2.32Up
S2 cells (growing)118 ± 34 of 4 1.20None
Whole fly98 ± 134 of 4

Looking for FBgn0004227. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime