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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004237 through 18771 annotations produced 1 hits



Heterogeneous nuclear ribonucleoprotein at 85CD (Hrb87F):

Annotation Number : CG12749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004237
Gbrowse : chr3R:9483044-9486241 (-) // 100.0 //
Probeset : 1639118_a_at
Accessions : protein= NP_001163602; /// NP_476806; /// NP_476807;, nucleotide= NM_001170131; /// NM_057458; /// NM_057459;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred by curator /// 0005634 // nucleus
FlyMine data for FBgn0004237.
Homophila reports that CG12749 is a close match (3e-14) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG12749 interacts with CG16894 CG9106 CG2604 CG5027 Dmel CG34110 .
TRiP has 2 RNAi stocks for FBgn0004237 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain371 74 of 4 0.80Down
Head288 134 of 4 0.70Down
Eye337 214 of 4 0.77Down
Thoracicoabdominal ganglion405 24 of 4 0.90None
Salivary gland594 224 of 4 1.36Up
Crop406 104 of 4 0.90None
Midgut334 64 of 4 0.80Down
Tubule300 94 of 4 0.70Down
Hindgut353 74 of 4 0.80Down
Heart345 114 of 4 0.79Down
Fat body379 124 of 4 0.87Down
Ovary913 214 of 4 2.10Up
Testis126 14 of 4 0.30Down
Male accessory glands544 354 of 4 1.20Up
Virgin spermatheca833 334 of 4 1.91Up
Mated spermatheca868 544 of 4 1.99Up
Adult carcass261 254 of 4 0.60Down
Larval CNS1389 1034 of 4 3.18Up
Larval Salivary gland1093 244 of 4 2.50Up
Larval midgut436 194 of 4 1.00None
Larval tubule992 354 of 4 2.30Up
Larval hindgut668 324 of 4 1.53Up
Larval fat body498 344 of 4 1.10None
Larval trachea847 1074 of 4 1.94Up
Larval carcass950 894 of 4 2.17Up
S2 cells (growing)583 144 of 4 1.33Up
Whole fly437 164 of 4

Looking for FBgn0004237. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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