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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004240 through 18771 annotations produced 1 hits

Diptericin (Dpt):

Annotation Number : CG12763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004240
Gbrowse : chr2R:14753269-14754269 (+) // 100.0 //
Probeset : 1640022_at
Accessions : protein= NP_476808;, nucleotide= NM_057460;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0004240.
BDGP gene expression has embryonic in situ data for Dpt: 35 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0004240 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.80None
Head3 01 of 4 1.20None
Eye3 10 of 4 1.10None
Thoracicoabdominal ganglion1 00 of 4 0.60None
Salivary gland6 21 of 4 2.35None
Crop2 11 of 4 0.70None
Midgut7 00 of 4 2.50Up
Tubule2 00 of 4 0.90None
Hindgut4 10 of 4 1.50None
Heart2 00 of 4 0.84None
Fat body3 11 of 4 1.32None
Ovary1 00 of 4 0.40None
Testis2 01 of 4 0.90None
Male accessory glands1 00 of 4 0.60None
Virgin spermatheca2 00 of 4 0.78None
Mated spermatheca3 11 of 4 1.36None
Adult carcass7 20 of 4 2.70None
Larval CNS0 00 of 4 0.30None
Larval Salivary gland4 01 of 4 1.70None
Larval midgut2 00 of 4 0.82None
Larval tubule3 10 of 4 1.30None
Larval hindgut3 00 of 4 1.10None
Larval fat body6 20 of 4 2.30None
Larval trachea2 10 of 4 0.96None
Larval carcass2 10 of 4 0.81None
S2 cells (growing)0 00 of 4 0.28None
Whole fly2 10 of 4

Looking for FBgn0004240. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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