Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004242 through 18771 annotations produced 2 hits



Synaptotagmin1 (Syt1):

Annotation Number : CG3139
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004242
Gbrowse : chr2L:2780740-2799970 (-) // 100.0 //
Probeset : 1636345_s_at
Accessions : protein= NP_523460; /// NP_722838; /// NP_722839; /// NP_995619;, nucleotide= NM_078736; /// NM_164501; /// NM_164502; /// NM_205897;
Pathway : 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or s
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred fr
FlyMine data for FBgn0004242.
BDGP gene expression has embryonic in situ data for syt: 10 pix of staining in 4 body parts.
Homophila reports that CG3139 is a close match (2e-12) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
BioGrid reports that CG3139 interacts with CG10047 CG40306 CG40306 .
TRiP has 2 RNAi stocks for FBgn0004242 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1255 464 of 418.50Up
Head520 384 of 4 7.70Up
Eye883 554 of 413.02Up
Thoracicoabdominal ganglion1417 424 of 420.90Up
Salivary gland10 10 of 4 0.16Down
Crop3 01 of 4 0.10Down
Midgut10 12 of 4 0.20Down
Tubule3 10 of 4 0.00Down
Hindgut4 01 of 4 0.10Down
Heart5 12 of 4 0.09Down
Fat body17 64 of 4 0.26Down
Ovary0 00 of 4 0.00Down
Testis3 01 of 4 0.00Down
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca4 11 of 4 0.07Down
Mated spermatheca4 12 of 4 0.07Down
Adult carcass26 34 of 4 0.40Down
Larval CNS637 774 of 4 9.39Up
Larval Salivary gland7 10 of 4 0.11Down
Larval midgut5 01 of 4 0.08Down
Larval tubule15 24 of 4 0.20Down
Larval hindgut4 02 of 4 0.07Down
Larval fat body99 64 of 4 1.50Up
Larval trachea14 232 of 4 0.21Down
Larval carcass6 04 of 4 0.10Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly67 94 of 4



Synaptotagmin1 (Syt1):

Annotation Number : HDC00470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004242
Gbrowse : chr2L:2799884-2800736 (-) // 100.0 //
Probeset : 1635102_at
Accessions : protein= NP_523460; /// NP_722838; /// NP_722839; /// NP_995619;, nucleotide= NM_078736; /// NM_164501; /// NM_164502; /// NM_205897;
Pathway : 0008021 // synaptic vesicle // inferred from direct assay /// 0008021 // synaptic vesicle // inferred from sequence or s
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred fr
FlyMine data for FBgn0004242.
BDGP gene expression has embryonic in situ data for syt: 10 pix of staining in 4 body parts.
TRiP has 2 RNAi stocks for FBgn0004242 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.60None
Head6 20 of 4 0.70None
Eye2 10 of 4 0.29Down
Thoracicoabdominal ganglion8 20 of 4 0.90None
Salivary gland13 30 of 4 1.41None
Crop12 10 of 4 1.30None
Midgut7 10 of 4 0.80None
Tubule7 10 of 4 0.70Down
Hindgut13 30 of 4 1.40None
Heart5 20 of 4 0.61None
Fat body10 10 of 4 1.09None
Ovary15 10 of 4 1.60Up
Testis2 10 of 4 0.30Down
Male accessory glands15 40 of 4 1.60None
Virgin spermatheca2 00 of 4 0.31Down
Mated spermatheca6 20 of 4 0.68None
Adult carcass12 50 of 4 1.30None
Larval CNS5 10 of 4 0.60None
Larval Salivary gland7 20 of 4 0.74None
Larval midgut4 20 of 4 0.47None
Larval tubule16 30 of 4 1.70None
Larval hindgut13 20 of 4 1.39None
Larval fat body10 00 of 4 1.10None
Larval trachea8 20 of 4 0.87None
Larval carcass18 10 of 4 1.89Up
S2 cells (growing)13 10 of 4 1.46None
Whole fly9 10 of 4

Looking for FBgn0004242. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime